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阿魏酸在阿尔茨海默病中的应用:文本挖掘与实验验证相结合

Application of Ferulic Acid for Alzheimer's Disease: Combination of Text Mining and Experimental Validation.

作者信息

Meng Guilin, Meng Xiulin, Ma Xiaoye, Zhang Gengping, Hu Xiaolin, Jin Aiping, Zhao Yanxin, Liu Xueyuan

机构信息

Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.

School of Computer Science and Informatics, Indiana University, Bloomington, IN, United States.

出版信息

Front Neuroinform. 2018 May 29;12:31. doi: 10.3389/fninf.2018.00031. eCollection 2018.

Abstract

Alzheimer's disease (AD) is an increasing concern in human health. Despite significant research, highly effective drugs to treat AD are lacking. The present study describes the text mining process to identify drug candidates from a traditional Chinese medicine (TCM) database, along with associated protein target mechanisms. We carried out text mining to identify literatures that referenced both AD and TCM and focused on identifying compounds and protein targets of interest. After targeting one potential TCM candidate, corresponding protein-protein interaction (PPI) networks were assembled in STRING to decipher the most possible mechanism of action. This was followed by validation using Western blot and co-immunoprecipitation in an AD cell model. The text mining strategy using a vast amount of AD-related literature and the TCM database identified curcumin, whose major component was ferulic acid (FA). This was used as a key candidate compound for further study. Using the top calculated interaction score in STRING, BACE1 and MMP2 were implicated in the activity of FA in AD. Exposure of SHSY5Y-APP cells to FA resulted in the decrease in expression levels of BACE-1 and APP, while the expression of MMP-2 and MMP-9 increased in a dose-dependent manner. This suggests that FA induced BACE1 and MMP2 pathways maybe novel potential mechanisms involved in AD. The text mining of literature and TCM database related to AD suggested FA as a promising TCM ingredient for the treatment of AD. Potential mechanisms interconnected and integrated with Aβ aggregation inhibition and extracellular matrix remodeling underlying the activity of FA were identified using studies.

摘要

阿尔茨海默病(AD)对人类健康的影响日益受到关注。尽管进行了大量研究,但仍缺乏治疗AD的高效药物。本研究描述了从中药数据库中识别候选药物及其相关蛋白质靶点机制的文本挖掘过程。我们通过文本挖掘来识别同时提及AD和中药的文献,并着重确定感兴趣的化合物和蛋白质靶点。在确定一种潜在的中药候选物后,在STRING中构建相应的蛋白质-蛋白质相互作用(PPI)网络,以解读最可能的作用机制。随后在AD细胞模型中通过蛋白质印迹法和免疫共沉淀法进行验证。利用大量与AD相关的文献和中药数据库的文本挖掘策略识别出姜黄素,其主要成分是阿魏酸(FA)。将其作为进一步研究的关键候选化合物。根据STRING中计算出的最高相互作用得分,BACE1和MMP2与FA在AD中的活性有关。将SHSY5Y-APP细胞暴露于FA后,BACE-1和APP的表达水平降低,而MMP-2和MMP-9的表达呈剂量依赖性增加。这表明FA诱导的BACE1和MMP2途径可能是AD中涉及的新的潜在机制。对与AD相关的文献和中药数据库进行文本挖掘表明,FA是一种有前景的治疗AD的中药成分。通过研究确定了与FA活性相关的、与Aβ聚集抑制和细胞外基质重塑相互关联并整合的潜在机制。

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