• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

Metagenomic data on associated bacterial communities using culture dependent approaches and 16S rRNA sequencing.

作者信息

Zarkasi Kamarul Zaman, Halim Mardani Abdul, Nazari Teh Faridah, Daud Feizal

机构信息

School of Biological Sciences, Universiti Sains Malaysia, Penang, Malaysia.

School of Natural and Environmental Sciences, Newcastle University, Newcastle upon Tyne, United Kingdom.

出版信息

Data Brief. 2018 May 23;19:514-519. doi: 10.1016/j.dib.2018.05.052. eCollection 2018 Aug.

DOI:10.1016/j.dib.2018.05.052
PMID:29900350
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5997914/
Abstract

This article contains data on the bacterial communities and its diversity associated with . The samples were obtained from two major estuaries in Penang, Malaysia using a culture dependent and 16S rRNA Illumina sequencing approaches. , a commercial blood cockles and popular seafoods, is fragile to the surrounding environments. Thus, our research focused to better understand the bacterial communities and it diversity in the , as well as on the generation of a metagenomic library from to further understanding on it diversity. The bacteria Vibrionaceae (34.1%) was predominant in the from both environments followed by Enterobacteriaceae (33.3%) and Bacillaceae (16.75%). sp., sp., and were the most abundant species present. The data generated in this research is the first metagenomic examination of and will provide as a baseline to understand the bacterial communities associated with and its surrounding natural environments.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a9d/5997914/2c26c8d5888d/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a9d/5997914/d7d9f0a1a751/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a9d/5997914/2c26c8d5888d/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a9d/5997914/d7d9f0a1a751/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8a9d/5997914/2c26c8d5888d/gr2.jpg

相似文献

1
Metagenomic data on associated bacterial communities using culture dependent approaches and 16S rRNA sequencing.
Data Brief. 2018 May 23;19:514-519. doi: 10.1016/j.dib.2018.05.052. eCollection 2018 Aug.
2
Beneath the surface: Exploring microplastic intricacies in Anadara granosa.表面之下:探究泥蚶中的微塑料复杂性。
Mar Environ Res. 2024 Jul;199:106581. doi: 10.1016/j.marenvres.2024.106581. Epub 2024 Jun 3.
3
Dataset of blood cockle () microbiota from coastal areas and earthen-pond farms around the upper Gulf of Thailand.泰国湾上游沿海地区和土池养殖场的血蚶微生物群数据集。
Data Brief. 2020 Mar 10;30:105393. doi: 10.1016/j.dib.2020.105393. eCollection 2020 Jun.
4
Evaluation of the potential bioaccumulation ability of the blood cockle (Anadara granosa L.) for assessment of environmental matrices of mudflats.评价血蚶(Anadara granosa L.)对滩涂环境基质的潜在生物蓄积能力。
Sci Total Environ. 2013 Jun 1;454-455:584-97. doi: 10.1016/j.scitotenv.2013.03.001. Epub 2013 Apr 10.
5
Survival of Vibrio spp. including inoculated V. cholerae 0139 during heat-treatment of cockles (Anadara granosa).在蚶(泥蚶)热处理过程中包括接种的霍乱弧菌0139在内的弧菌属细菌的存活情况。
Int J Food Microbiol. 1998 Jul 21;42(3):167-73. doi: 10.1016/s0168-1605(98)00085-3.
6
CaCO from shell as reparative dentin inducer in odontoblast pulp cells: In-vivo study.来自贝壳的碳酸钙作为成牙本质细胞牙髓细胞中修复性牙本质诱导剂的体内研究。
J Oral Biol Craniofac Res. 2023 Mar-Apr;13(2):164-168. doi: 10.1016/j.jobcr.2023.01.003. Epub 2023 Jan 6.
7
Utilization of molecular markers for the conservation of blood cockles, Anadara granosa (Arcidae).
Genet Mol Res. 2011 Jun 28;10(2):1245-61. doi: 10.4238/vol10-2gmr1103.
8
Accumulation of Trace Metals in Anadara granosa and Anadara inaequivalvis from Pattani Bay and the Setiu Wetlands.北大西洋扇贝和不等边血蚶中痕量金属在北大年湾和仕林湿地的累积情况
Bull Environ Contam Toxicol. 2016 Apr;96(4):472-7. doi: 10.1007/s00128-015-1717-z. Epub 2016 Jan 2.
9
Concentration of Mercury in Cockles (Anadara granosa and A. antiquata) Harvested from Estuaries of Western Lombok, Indonesia, and Potential Risks to Human Health.印度尼西亚龙目岛西部河口采集的鸟蛤(颗粒血蚶和古老血蚶)中的汞浓度及其对人类健康的潜在风险。
Bull Environ Contam Toxicol. 2016 Jan;96(1):20-4. doi: 10.1007/s00128-015-1672-8. Epub 2015 Oct 8.
10
The data on metagenomic profile of bacterial diversity changes in the different concentration of fermented romaine lettuce brine.不同浓度发酵生菜盐水细菌多样性宏基因组图谱的数据。
Data Brief. 2019 Jun 25;25:104190. doi: 10.1016/j.dib.2019.104190. eCollection 2019 Aug.

本文引用的文献

1
In vitro characteristics of an Atlantic salmon (Salmo salar L.) hind gut microbial community in relation to different dietary treatments.大西洋鲑(Salmo salar L.)后肠微生物群落与不同日粮处理相关的体外特性
Res Microbiol. 2017 Oct;168(8):751-759. doi: 10.1016/j.resmic.2017.07.003. Epub 2017 Jul 17.
2
Atlantic Salmon (Salmo salar L.) Gastrointestinal Microbial Community Dynamics in Relation to Digesta Properties and Diet.大西洋鲑(Salmo salar L.)胃肠道微生物群落动态与消化物特性和饮食的关系
Microb Ecol. 2016 Apr;71(3):589-603. doi: 10.1007/s00248-015-0728-y. Epub 2016 Jan 16.
3
UPARSE: highly accurate OTU sequences from microbial amplicon reads.
UPARSE:从微生物扩增子读取中获得高度准确的 OTU 序列。
Nat Methods. 2013 Oct;10(10):996-8. doi: 10.1038/nmeth.2604. Epub 2013 Aug 18.
4
UCHIME improves sensitivity and speed of chimera detection.UCHIME 提高了嵌合体检测的灵敏度和速度。
Bioinformatics. 2011 Aug 15;27(16):2194-200. doi: 10.1093/bioinformatics/btr381. Epub 2011 Jun 23.
5
FastTree 2--approximately maximum-likelihood trees for large alignments.FastTree 2--用于大型比对的近似最大似然树。
PLoS One. 2010 Mar 10;5(3):e9490. doi: 10.1371/journal.pone.0009490.
6
Bacterial diversity of the digestive gland of Sydney rock oysters, Saccostrea glomerata infected with the paramyxean parasite, Marteilia sydneyi.感染副壳粘孢子虫(Marteilia sydneyi)的悉尼岩蚝(Saccostrea glomerata)消化腺的细菌多样性。
J Appl Microbiol. 2010 Aug;109(2):613-622. doi: 10.1111/j.1365-2672.2010.04687.x. Epub 2010 Jan 23.
7
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.用于将rRNA序列快速分类到新细菌分类学中的朴素贝叶斯分类器。
Appl Environ Microbiol. 2007 Aug;73(16):5261-7. doi: 10.1128/AEM.00062-07. Epub 2007 Jun 22.
8
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.Greengenes,一个经过嵌合体检查的16S rRNA基因数据库,与ARB兼容的工作台。
Appl Environ Microbiol. 2006 Jul;72(7):5069-72. doi: 10.1128/AEM.03006-05.
9
MUSCLE: a multiple sequence alignment method with reduced time and space complexity.MUSCLE:一种时间和空间复杂度降低的多序列比对方法。
BMC Bioinformatics. 2004 Aug 19;5:113. doi: 10.1186/1471-2105-5-113.