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基于 CRISPR/Cas 的高通量 CRISPR 文库定制。

CRISPR/Cas-based customization of pooled CRISPR libraries.

机构信息

Department of Biomedical Sciences, University of Ulsan College of Medicine, Asan Medical Center, Seoul, Republic of Korea.

Stem Cell Immunomodulation Research Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.

出版信息

PLoS One. 2018 Jun 20;13(6):e0199473. doi: 10.1371/journal.pone.0199473. eCollection 2018.

Abstract

Pooled CRISPR libraries are widely used in high-throughput screening to study various biological processes. Various pooled CRISPR libraries have been shared for CRISPR screens and useful tools have been developed to construct researcher's own libraries, however, many researchers are struggling to create their own pooled CRISPR libraries: it is a time-consuming, labor-intensive, and expensive process. In this study, we develop a simple method to customize conventional pooled CRISPR libraries using the CRISPR/Cas9 system. We show that conventional pooled CRISPR libraries can be modified by eliminating gRNAs that target positive genes, enabling the identification of unknown target genes in CRISPR screening. CRISPR/Cas9 system can be applied as a precise tool for customizing conventional pooled CRISPR libraries and will broaden the scope of high-throughput screening technology.

摘要

汇集 CRISPR 文库广泛用于高通量筛选研究各种生物过程。各种汇集的 CRISPR 文库已经被共享用于 CRISPR 筛选,并且已经开发了有用的工具来构建研究人员自己的文库,但是,许多研究人员难以创建自己的汇集 CRISPR 文库:这是一个耗时,劳动密集型和昂贵的过程。在这项研究中,我们使用 CRISPR/Cas9 系统开发了一种简单的方法来定制常规汇集的 CRISPR 文库。我们表明,常规汇集的 CRISPR 文库可以通过消除靶向阳性基因的 gRNA 来修饰,从而能够在 CRISPR 筛选中鉴定未知的靶基因。CRISPR/Cas9 系统可以作为定制常规汇集的 CRISPR 文库的精确工具,并将拓宽高通量筛选技术的范围。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dc6b/6010251/16ac9dede160/pone.0199473.g001.jpg

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