Department of Respiratory Medicine, First Hospital of Jilin University, Changchun, Jilin, China (mainland).
Department of Andrology, First Hospital of Jilin University, Changchun, Jilin, China (mainland).
Med Sci Monit. 2018 Jun 23;24:4317-4323. doi: 10.12659/MSM.908359.
BACKGROUND The aim of this study was to investigate the expression of a novel long noncoding RNA (lncRNA), LL22NC03-N64E9.1, and its effect on the phenotype of lung cancer cells and tissues using The Cancer Genome Atlas (TCGA) RNA sequencing data and other publicly available profiling data. MATERIAL AND METHODS The lung cancer dataset GSE30219 was downloaded from the Gene Expression Omnibus (GEO) repository. Differentially expressed lncRNA, LL22NC03-N64E9.1, in 48 lung cancer tissue samples and adjacent normal lung tissues, normal lung cell lines BEAS-2B and A549, and lung cancer cell lines, H1703, and H292, were detected by quantitative reverse transcription polymerase chain reaction (PCR) (qRT-PCR). Interference efficiency was performed using small interfering RNA (siRNA). Tumor levels of lncRNA, LL22NC03-N64E9.1, and clinicopathological parameters were statistically analyzed. RESULTS Analysis of the GSE30219 test cohort showed that lncRNA, LL22NC03-N64E9.1 expression was significantly increased in lung cancer. In clinical tissue samples, the level of LL22NC03-N64E9.1 in patients with lung cancer was significantly increased compared with adjacent normal lung tissues (P<0.001). The level of LL22NC03-N64E9.1 in patients with lung cancer was significantly correlated with tumor size and TNM stage (P<0.05), but not with age, sex and the presence of lymph node metastasis (P>0.05). In the H292 cells, following knockdown of LL22NC03-N64E9.1, cell proliferation and cloning were reduced. CONCLUSIONS Expression of lncRNA, LL22NC03-N64E9.1, promoted proliferation of lung cancer cells in vitro, was highly expressed in lung cancer tissues and was associated with increased overall survival (OS), tumor size, and tumor stage in patients with lung cancer.
本研究旨在利用癌症基因组图谱(TCGA)RNA 测序数据和其他公开的分析数据,研究一种新型长非编码 RNA(lncRNA),LL22NC03-N64E9.1 的表达及其对肺癌细胞和组织表型的影响。
从基因表达综合数据库(GEO)下载肺癌数据集 GSE30219。采用定量逆转录聚合酶链反应(qRT-PCR)检测 48 例肺癌组织样本及相邻正常肺组织、正常肺细胞系 BEAS-2B 和 A549 以及肺癌细胞系 H1703 和 H292 中差异表达的 lncRNA,LL22NC03-N64E9.1。采用小干扰 RNA(siRNA)进行干扰效率检测。统计分析 lncRNA,LL22NC03-N64E9.1 的肿瘤水平及临床病理参数。
GSE30219 测试队列分析显示,lncRNA,LL22NC03-N64E9.1 在肺癌中表达显著增加。在临床组织样本中,与相邻正常肺组织相比,肺癌患者的 LL22NC03-N64E9.1 水平显著升高(P<0.001)。肺癌患者的 LL22NC03-N64E9.1 水平与肿瘤大小和 TNM 分期显著相关(P<0.05),但与年龄、性别和淋巴结转移无关(P>0.05)。在 H292 细胞中,敲低 LL22NC03-N64E9.1 后,细胞增殖和克隆减少。
lncRNA,LL22NC03-N64E9.1 的表达促进了肺癌细胞的体外增殖,在肺癌组织中高表达,并与肺癌患者的总生存(OS)、肿瘤大小和肿瘤分期增加相关。