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本文引用的文献

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Integration of Contact Tracing and Phylogenetics in an Investigation of Acute HIV Infection.急性 HIV 感染调查中接触者追踪与系统发生学的整合。
Sex Transm Dis. 2018 Apr;45(4):222-228. doi: 10.1097/OLQ.0000000000000726.
2
Defining HIV-1 transmission clusters based on sequence data.基于序列数据定义HIV-1传播簇。
AIDS. 2017 Jun 1;31(9):1211-1222. doi: 10.1097/QAD.0000000000001470.
3
Social and Genetic Networks of HIV-1 Transmission in New York City.纽约市HIV-1传播的社会与基因网络
PLoS Pathog. 2017 Jan 9;13(1):e1006000. doi: 10.1371/journal.ppat.1006000. eCollection 2017 Jan.
4
Connecting the dots: network data and models in HIV epidemiology.梳理脉络:HIV流行病学中的网络数据与模型
AIDS. 2016 Aug 24;30(13):2009-20. doi: 10.1097/QAD.0000000000001184.
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Integrating molecular epidemiology and social network analysis to study infectious diseases: Towards a socio-molecular era for public health.整合分子流行病学与社会网络分析以研究传染病:迈向公共卫生的社会分子时代。
Infect Genet Evol. 2016 Dec;46:248-255. doi: 10.1016/j.meegid.2016.05.042. Epub 2016 Jun 2.
6
Ten Years of Screening and Testing for Acute HIV Infection in North Carolina.北卡罗来纳州急性HIV感染的十年筛查与检测
J Acquir Immune Defic Syndr. 2016 Jan 1;71(1):111-9. doi: 10.1097/QAI.0000000000000818.
7
Phylogenetic Investigation of a Statewide HIV-1 Epidemic Reveals Ongoing and Active Transmission Networks Among Men Who Have Sex With Men.一项针对全州范围内HIV-1疫情的系统发育研究揭示了男男性行为者中持续且活跃的传播网络。
J Acquir Immune Defic Syndr. 2015 Dec 1;70(4):428-35. doi: 10.1097/QAI.0000000000000786.
8
Ongoing HIV Transmission and the HIV Care Continuum in North Carolina.北卡罗来纳州的持续艾滋病毒传播与艾滋病毒护理连续体
PLoS One. 2015 Jun 4;10(6):e0127950. doi: 10.1371/journal.pone.0127950. eCollection 2015.
9
Vital Signs: HIV diagnosis, care, and treatment among persons living with HIV--United States, 2011.生命体征:美国2011年艾滋病毒感染者中的艾滋病毒诊断、护理及治疗情况
MMWR Morb Mortal Wkly Rep. 2014 Nov 28;63(47):1113-7.
10
Previously undiagnosed HIV infections identified through cluster investigation, North Carolina, 2002-2007.2002年至2007年,北卡罗来纳州通过聚类调查发现的既往未诊断的艾滋病毒感染情况。
AIDS Behav. 2015 Apr;19(4):723-31. doi: 10.1007/s10461-014-0913-x.

利用系统发生学了解 HIV 传播和性伴侣通知网络。

Leveraging Phylogenetics to Understand HIV Transmission and Partner Notification Networks.

机构信息

Department of Epidemiology, Gillings School of Global Public Health, University of North Carolina at Chapel Hill, Chapel Hill, NC.

Substance Abuse Treatment Evaluation and Interventions, RTI International, Research Triangle Park, NC.

出版信息

J Acquir Immune Defic Syndr. 2018 Aug 1;78(4):367-375. doi: 10.1097/QAI.0000000000001695.

DOI:10.1097/QAI.0000000000001695
PMID:29940601
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6058319/
Abstract

BACKGROUND

Partner notification is an important component of public health test and treat interventions. To enhance this essential function, we assessed the potential for molecular methods to supplement routine partner notification and corroborate HIV networks.

METHODS

All persons diagnosed with HIV infection in Wake County, NC, during 2012-2013 and their disclosed sexual partners were included in a sexual network. A data set containing HIV-1 pol sequences collected in NC during 1997-2014 from 15,246 persons was matched to HIV-positive persons in the network and used to identify putative transmission clusters. Both networks were compared.

RESULTS

The partner notification network comprised 280 index cases and 383 sexual partners and high-risk social contacts (n = 131 HIV-positive). Of the 411 HIV-positive persons in the partner notification network, 181 (44%) did not match to a HIV sequence, 61 (15%) had sequences but were not identified in a transmission cluster, and 169 (41%) were identified in a transmission cluster. More than half (59%) of transmission clusters bridged sexual network partnerships that were not recognized in the partner notification; most of these clusters were dominated by men who have sex with men.

CONCLUSIONS

Partner notification and HIV sequence analysis provide complementary representations of the existent partnerships underlying the HIV transmission network. The partner notification network components were bridged by transmission clusters, particularly among components dominated by men who have sex with men. Supplementing the partner notification network with phylogenetic data highlighted avenues for intervention.

摘要

背景

伙伴通知是公共卫生检测和治疗干预的重要组成部分。为了增强这一重要功能,我们评估了分子方法补充常规伙伴通知和证实 HIV 网络的潜力。

方法

所有在北卡罗来纳州威克县 2012-2013 年期间被诊断为 HIV 感染的人和他们披露的性伴侣都被纳入性网络。包含 HIV-1 pol 序列的数据集是从 1997-2014 年期间在北卡罗来纳州从 15246 人收集的,与网络中的 HIV 阳性者相匹配,并用于识别可能的传播簇。两个网络进行了比较。

结果

伙伴通知网络包括 280 个索引病例和 383 个性伴侣和高危社会接触者(n = 131 个 HIV 阳性者)。在伙伴通知网络中的 411 个 HIV 阳性者中,181 人(44%)与 HIV 序列不匹配,61 人(15%)有序列但未在传播簇中识别出,169 人(41%)在传播簇中识别出。超过一半(59%)的传播簇连接了在伙伴通知中未被识别的性网络伙伴关系;这些簇大多数由男男性行为者主导。

结论

伙伴通知和 HIV 序列分析提供了 HIV 传播网络中现存伙伴关系的互补表示。伙伴通知网络的组成部分被传播簇连接起来,特别是在由男男性行为者主导的组成部分中。用系统发育数据补充伙伴通知网络突出了干预的途径。