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色氨酸启动子Pribnow框中的温度依赖性转变。

A temperature dependent transition in the Pribnow box of the trp promoter.

作者信息

Lefevre J F, Lane A N, Jardetzky O

出版信息

FEBS Lett. 1985 Oct 7;190(1):37-40. doi: 10.1016/0014-5793(85)80422-1.

DOI:10.1016/0014-5793(85)80422-1
PMID:2995129
Abstract

Proton NMR spectra of the trp operator-promoter (sequence CGTACTAGTT.AACTAGTACG) show selective changes in chemical shift and relaxation rates over the range of temperature 0-45 degrees C for the non-exchangeable protons of A11 and A12 only. These bases are in the centre of the Pribnow box. The changes imply that at least three conformational states become significantly populated in this range of temperature, and probably involve a change in the propellor twists of A11 and A12 for one transition, and changes in the helical twist and local pitch for the other. As (1) mutations in the Pribnow box that destroy the TAA sequence impair promoter activity, and (2) the abortive initiation assay for RNA polymerase shows a transition near 20 degrees C, we propose that the observed conformational transitions in the trp promoter are an essential feature of good promoters.

摘要

色氨酸操纵子启动子(序列CGTACTAGTT.AACTAGTACG)的质子核磁共振谱显示,仅A11和A12的不可交换质子在0至45摄氏度的温度范围内化学位移和弛豫速率有选择性变化。这些碱基位于Pribnow框的中心。这些变化表明,在该温度范围内至少有三种构象状态变得显著丰富,并且可能涉及一次转变中A11和A12的螺旋桨扭转变化,以及另一次转变中螺旋扭转和局部螺距的变化。由于(1)破坏TAA序列的Pribnow框中的突变会损害启动子活性,以及(2)RNA聚合酶的流产起始测定显示在20摄氏度附近有一个转变,我们提出在色氨酸启动子中观察到的构象转变是良好启动子的一个基本特征。

相似文献

1
A temperature dependent transition in the Pribnow box of the trp promoter.色氨酸启动子Pribnow框中的温度依赖性转变。
FEBS Lett. 1985 Oct 7;190(1):37-40. doi: 10.1016/0014-5793(85)80422-1.
2
N.m.r. assignments and temperature-dependent conformational transitions of a mutant trp operator-promoter in solution.溶液中突变型色氨酸操纵子-启动子的核磁共振归属及温度依赖性构象转变
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A description of conformational transitions in the Pribnow box of the trp promoter of Escherichia coli.大肠杆菌色氨酸启动子Pribnow框中构象转变的描述。
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4
Nuclear magnetic resonance study of the proton exchange rate in the operator-promoter DNA sequence of the trp operon of Escherichia coli.大肠杆菌色氨酸操纵子操纵子-启动子DNA序列中质子交换率的核磁共振研究。
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The solution conformations of a mutant trp operator determined by n.m.r. spectroscopy.通过核磁共振光谱法测定的突变型色氨酸操纵基因的溶液构象。
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9
Conformational properties of the -35 region of the trp promoter in solution: comparison of the wild-type sequence with an AT transversion.溶液中色氨酸启动子 -35 区域的构象特性:野生型序列与 AT 颠换序列的比较。
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Synthesis and proton-NMR studies of oligonucleotides containing an apurinic (AP) site.含脱嘌呤(AP)位点的寡核苷酸的合成及质子核磁共振研究
J Biomol Struct Dyn. 1987 Oct;5(2):219-47. doi: 10.1080/07391102.1987.10506391.

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The effects of sequence context on base dynamics at TpA steps in DNA studied by NMR.通过核磁共振研究序列上下文对DNA中TpA步碱基动力学的影响。
Nucleic Acids Res. 1995 Oct 11;23(19):3962-6. doi: 10.1093/nar/23.19.3962.
3
N.m.r. assignments and temperature-dependent conformational transitions of a mutant trp operator-promoter in solution.溶液中突变型色氨酸操纵子-启动子的核磁共振归属及温度依赖性构象转变
Biochem J. 1989 May 1;259(3):715-24. doi: 10.1042/bj2590715.