Institute of Physics , Polish Academy of Sciences , Al. Lotnikow 32/46 , 02-668 Warsaw , Poland.
Institute for Computational Science and Technology , 6 Quarter, Linh Trung Ward, Thu Duc District, Ho Chi Minh City 700000 , Vietnam.
J Phys Chem B. 2018 Jul 26;122(29):7243-7252. doi: 10.1021/acs.jpcb.8b03983. Epub 2018 Jul 17.
Amyloid-β (Aβ) peptides are intrinsically disordered peptides, and their aggregation is the hallmark of Alzheimer's disease development. The propensity of the Aβ peptide to intermolecular interactions, the latter favoring different types of oligomers and aggregated forms, has been the object of a huge number of studies. Several facts are now established: the presence of large amount of d-block (M) ions (Zn, Cu, and Fe) in the aggregated forms; the 1:1 M/Aβ ratio favors the formation of amorphous aggregates, with an aggregation rate lower than that in the absence of such ions. In particular, statistical models describing the interactions between copper and amyloid peptides are mandatory to explain the relationship between neurodegeneration, copper dyshomeostasis, and overproduction of reactive oxygen species, the latter event occurring with aging. In this work, we show, by replica-exchange molecular dynamics simulations, that a copper ion (Cu) bound as in the experimentally observed prevailing coordination enhances the probability of closed structures that hinder the formation of extended intermolecular hydrogen bonds that stabilize fibrillar ordered aggregated forms. On the other hand, this effect enhances the catalytic role of the complex during the lifetime of soluble forms.
淀粉样蛋白-β (Aβ) 肽是无规卷曲的肽,其聚集是阿尔茨海默病发展的标志。Aβ 肽具有分子间相互作用的倾向,后者有利于不同类型的低聚物和聚集形式,这一直是大量研究的对象。现在已经确定了几个事实:聚集形式中存在大量 d 块(M)离子(Zn、Cu 和 Fe);1:1 M/Aβ 比例有利于无定形聚集的形成,其聚集速率低于没有这些离子的情况。特别是,描述铜与淀粉样肽相互作用的统计模型对于解释神经退行性变、铜动态平衡失调以及活性氧(ROS)的过度产生之间的关系是强制性的,后一事件发生在衰老过程中。在这项工作中,我们通过 replica-exchange 分子动力学模拟表明,实验观察到的主要配位方式结合的铜离子 (Cu) 增强了封闭结构的形成概率,这些结构阻碍了稳定纤维状有序聚集形式的扩展分子间氢键的形成。另一方面,这种效应增强了该配合物在可溶性形式的寿命期间的催化作用。