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本文引用的文献

1
Prevalence of Extended-Spectrum β-Lactamases CTX-M-8 and CTX-M-2-Producing Salmonella Serotypes from Clinical and Nonhuman Isolates in Brazil.巴西临床和非人源分离株中产超广谱β-内酰胺酶CTX-M-8和CTX-M-2的沙门氏菌血清型的流行情况
Microb Drug Resist. 2017 Jul;23(5):580-589. doi: 10.1089/mdr.2016.0085. Epub 2016 Nov 9.
2
Epidemiology, Clinical Presentation, Laboratory Diagnosis, Antimicrobial Resistance, and Antimicrobial Management of Invasive Salmonella Infections.侵袭性沙门氏菌感染的流行病学、临床表现、实验室诊断、抗菌药物耐药性及抗菌药物管理
Clin Microbiol Rev. 2015 Oct;28(4):901-37. doi: 10.1128/CMR.00002-15.
3
Benchmarking of methods for genomic taxonomy.基因组分类方法的基准测试
J Clin Microbiol. 2014 May;52(5):1529-39. doi: 10.1128/JCM.02981-13. Epub 2014 Feb 26.
4
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).SEED 与利用子系统技术进行快速微生物基因组注释（RAST）。
Nucleic Acids Res. 2014 Jan;42(Database issue):D206-14. doi: 10.1093/nar/gkt1226. Epub 2013 Nov 29.
5
Multilocus sequence typing of total-genome-sequenced bacteria.全基因组测序细菌的多位点序列分型。
J Clin Microbiol. 2012 Apr;50(4):1355-61. doi: 10.1128/JCM.06094-11. Epub 2012 Jan 11.
6
Evolution of Salmonella nomenclature: a critical note.沙门氏菌命名法的演变：一个关键注释。
Folia Microbiol (Praha). 2011 Nov;56(6):497-503. doi: 10.1007/s12223-011-0075-4. Epub 2011 Nov 4.
7
Taming the elephant: Salmonella biology, pathogenesis, and prevention.驯服大象：沙门氏菌生物学、发病机制与预防。
Infect Immun. 2010 Jun;78(6):2356-69. doi: 10.1128/IAI.00096-10. Epub 2010 Apr 12.
8
Emergence, distribution, and molecular and phenotypic characteristics of Salmonella enterica serotype 4,5,12:i:-.肠炎沙门氏菌血清型4,5,12:i:-的出现、分布及分子和表型特征
Foodborne Pathog Dis. 2009 May;6(4):407-15. doi: 10.1089/fpd.2008.0213.
9
Do Salmonella carry spare tyres?沙门氏菌携带备用基因吗？
Trends Microbiol. 2008 Apr;16(4):142-8. doi: 10.1016/j.tim.2008.01.009. Epub 2008 Mar 28.
10
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.

在巴西分离出的三株肠炎沙门氏菌血清型4,[5],12:i:-菌株和一株鼠伤寒沙门氏菌菌株的基因组序列草图

Draft Genome Sequences of Three Salmonella enterica Serovar 4,[5],12:i:- Strains and One S. enterica Serovar Typhimurium Strain, Isolated in Brazil.

作者信息

Sales Ana Isabela Lopes, Milanez Guilherme Paier, Nascimento Leandro C, do Carmo Camila Pinheiro, da Costa Fernanda Luz Paulino, Pereira Gonçalo Amarante Guimarães, Martinez Roberto, Brocchi Marcelo

机构信息

Departamento de Biologia Celular, Molecular e Bioagentes Patogênicos, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo (USP), Ribeirão Preto, SP, Brazil

Departamento de Genética, Evolução Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas, SP, Brazil.

出版信息

Genome Announc. 2018 Jul 5;6(27):e00488-18. doi: 10.1128/genomeA.00488-18.

DOI:10.1128/genomeA.00488-18
PMID:29976603
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6033978/
Abstract

Draft genomes of three 4,[5],12:i:- (STi) strains isolated from human infections were obtained using Illumina sequencing. They were negative for the operon but positive for , and k-mer analyses revealed their identity as 4,[5],12:i:- 08-1736 and Typhimurium. A draft Typhimurium sequence is described for comparison.

摘要

使用Illumina测序技术获得了从人类感染中分离出的三株4,[5],12:i:-（STi）菌株的基因组草图。它们的操纵子呈阴性，但 、呈阳性，并且k-mer分析显示它们与4,[5],12:i:- 08-1736和鼠伤寒沙门氏菌一致。为了进行比较，描述了一份鼠伤寒沙门氏菌的序列草图。