Department of Biology, University of Copenhagen, 2100, Copenhagen Ø, Denmark.
ISME J. 2018 Nov;12(11):2608-2618. doi: 10.1038/s41396-018-0165-2. Epub 2018 Jul 5.
Microbial communities primarily consist of multiple species that affect one another's fitness both directly and indirectly. This study showed that the cocultivation of Paenibacillus amylolyticus and Xanthomonas retroflexus exhibited facultative mutualistic interactions in a static environment, during the course of which a new adapted phenotypic variant of X. retroflexus appeared. Although the emergence of this variant was not directly linked to the presence of P. amylolyticus, its establishment in the coculture enhanced the productivity of both species due to mutations that stimulated biofilm formation. The mutations were detected in genes encoding a diguanylate cyclase predicted to synthesise cyclic-di-GMP. Examinations of the biofilm formed in cocultures of P. amylolyticus and the new variant of X. retroflexus revealed a distinct spatial organisation: P. amylolyticus only resided in biofilms in association with X. retroflexus and occupied the outer layers. The X. retroflexus variant therefore facilitated increased P. amylolyticus growth as it produced more biofilm biomass. The increase in X. retroflexus biomass was thus not at the expense of P. amylolyticus, demonstrating that interspecies interactions can shape diversification in a mutualistic coculture and reinforce these interactions, ultimately resulting in enhanced communal performance.
微生物群落主要由多种相互影响的物种组成,这种影响既有直接的也有间接的。本研究表明,在静态环境中,解淀粉芽孢杆菌和反硝化细菌的共培养表现出兼性互利相互作用,在此过程中,反硝化细菌出现了一种新的适应表型变异体。虽然这种变异体的出现与解淀粉芽孢杆菌的存在没有直接联系,但由于突变刺激生物膜形成,它在共培养中的建立增强了两种生物的生产力。突变发生在编码双鸟苷酸环化酶的基因中,该酶被预测能合成环二鸟苷酸。对解淀粉芽孢杆菌和反硝化细菌新变异体共培养形成的生物膜进行了检查,发现其具有明显的空间组织:解淀粉芽孢杆菌仅与反硝化细菌相关联地存在于生物膜中,并占据外层。因此,反硝化细菌变异体促进了解淀粉芽孢杆菌的生长,因为它产生了更多的生物膜生物量。反硝化细菌生物量的增加并不是以牺牲解淀粉芽孢杆菌为代价的,这表明种间相互作用可以塑造互利共培养中的多样化,并加强这些相互作用,最终导致增强的群落性能。