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一种关于X射线吸收光谱中信息交换与报告标准的生物学视角。

A biological perspective towards a standard for information exchange and reporting in XAS.

作者信息

Sarangi Ritimukta

机构信息

Structural Molecular Biology, Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, CA 94306, USA.

出版信息

J Synchrotron Radiat. 2018 Jul 1;25(Pt 4):944-952. doi: 10.1107/S1600577518008779. Epub 2018 Jun 27.

Abstract

The complex structural landscape of biological samples and their sensitivity to X-ray exposure leads to specific challenges in biological X-ray absorption spectroscopy (bio-XAS) research, which in turn has necessitated standardization of various aspects of bio-XAS data measurement, analysis and interpretation. The bio-XAS community is therefore well suited for the development of a data-reporting standard with the specific aim of creating a feedback loop for improving/standardizing data analysis protocols and optionally to make published data available to collaborators/researchers in a meaningful and quantitative format. The XIF (XAFS information file) reporting format presented here contains key experimental and analysis parameters, useful in developing a consistent platform for bio-XAS research worldwide. Such a reporting standard, enforced by the user community and publishing groups alike, can be an important step towards the standardization of data measurement and analysis techniques in bio-XAS.

摘要

生物样品复杂的结构特征以及它们对X射线照射的敏感性给生物X射线吸收光谱(bio-XAS)研究带来了特定挑战,这进而促使bio-XAS数据测量、分析和解释的各个方面都需要标准化。因此,bio-XAS领域非常适合制定数据报告标准,其具体目标是创建一个反馈循环,以改进/规范数据分析协议,并以有意义的定量格式向合作者/研究人员提供已发表的数据。本文介绍的XIF(XAFS信息文件)报告格式包含关键的实验和分析参数,有助于在全球范围内为bio-XAS研究建立一个统一的平台。这样一个由用户群体和出版团体共同执行的报告标准,可能是bio-XAS数据测量和分析技术标准化的重要一步。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef54/6038602/d57cf7044266/s-25-00944-fig1.jpg

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