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DNA周围水和离子的动力学:它们有何特别之处?

Dynamics of water and ions around DNA: What is so special about them?

作者信息

Shweta Him, Sen Sobhan

机构信息

Spectroscopy Laboratory, School of Physical Sciences, Jawaharlal Nehru University, New Delhi 110067, India.

出版信息

J Biosci. 2018 Jul;43(3):499-518.

Abstract

Water around biomolecules is special for behaving strangely - both in terms of structure and dynamics, while ions are found to control various interactions in biomolecules such as DNA, proteins and lipids. The questions that how water and ions around these biomolecules behave in terms of their structure and dynamics, and how they affect the biomolecular functions have triggered tremendous research activities worldwide. Such activities not only unfolded important static and dynamic properties of water and ions around these biomolecules, but also provoked heated debate regarding their explanation and role in biological functions. DNA, being negatively charged, interacts strongly with the surrounding dipolar water and positively charged counterions, leading to complex electrostatic coupling of water and ions with the DNA. Recent timeresolved fluorescence Stokes shift experiments and related computer simulation studies from our and other laboratories have unfolded some unique dynamic characteristics of water and ions near different structures of DNA. These results are discussed here to showcase the specialty of water and ion dynamics around DNA.

摘要

生物分子周围的水具有特殊之处,其在结构和动力学方面表现异常,而离子则被发现可控制生物分子(如DNA、蛋白质和脂质)中的各种相互作用。这些生物分子周围的水和离子在结构和动力学方面如何表现,以及它们如何影响生物分子功能等问题,引发了全球范围内大量的研究活动。此类活动不仅揭示了这些生物分子周围水和离子的重要静态和动态特性,还引发了关于它们在生物学功能中的解释和作用的激烈争论。DNA带负电荷,与周围的偶极水和带正电荷的抗衡离子强烈相互作用,导致水和离子与DNA形成复杂的静电耦合。我们实验室和其他实验室最近进行的时间分辨荧光斯托克斯位移实验及相关计算机模拟研究,揭示了不同结构DNA附近水和离子的一些独特动态特征。在此讨论这些结果,以展示DNA周围水和离子动力学的特殊性。

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