Institut Universitaire de France IUF, 103 Boulevard St Michel, Paris F-75005, France; Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, F-69622 Villeurbanne, France.
Univ Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, F-69622 Villeurbanne, France.
Curr Opin Struct Biol. 2018 Jun;50:171-180. doi: 10.1016/j.sbi.2018.06.006. Epub 2018 Jul 10.
Glycosaminoglycans are biopolymers present in mammalian cells or in the extracellular matrix. To address their structure, the nature of the hexuronic acids and the position of sulfate groups must be determined. Tandem mass spectrometry using collision induced dissociation or electron-based fragmentation techniques, is a well-established approach for the identification of glycans but suffers from the frequent lack of diagnostic fragments in the case of glycosaminoglycans. This review presents alternative fragmentation techniques, namely photofragmentation in the IR and the UV ranges. Alternative approaches based on the direct analysis of the molecular structure, including ion mobility spectrometry and ion spectroscopies are reviewed. The potential of future multidimensional workflows for glycosaminoglycanomics is discussed.
糖胺聚糖是存在于哺乳动物细胞或细胞外基质中的生物聚合物。为了确定其结构,必须确定己糖醛酸的性质和硫酸基团的位置。串联质谱法(使用碰撞诱导解离或基于电子的碎裂技术)是鉴定聚糖的一种成熟方法,但在糖胺聚糖的情况下,经常缺乏诊断片段。本综述介绍了替代的碎裂技术,即在红外和紫外范围内的光碎裂。还综述了基于分子结构的直接分析的替代方法,包括离子淌度谱和离子光谱。讨论了未来用于糖胺聚糖组学的多维工作流程的潜力。