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布氏锥虫布氏亚种分泌/排泄蛋白的全基因组分析:免疫信息学方法研究功能特征和潜在靶点。

Genome-wide analysis of Excretory/Secretory proteins in Trypanosoma brucei brucei: Insights into functional characteristics and identification of potential targets by immunoinformatics approach.

机构信息

Department of Bioinformatics, Bharathiar University, Coimbatore, India.

Cytogenetics Department, EuroEspes Biomedical Research Center, Institute of Medical Science and Genomic Medicine, 15165 Bergondo, Corunna, Spain.

出版信息

Genomics. 2019 Sep;111(5):1124-1133. doi: 10.1016/j.ygeno.2018.07.007. Epub 2018 Jul 10.

Abstract

Trypanosoma brucei brucei (T.b.brucei) is an extra-cellular parasite that causes Animal African Trypanosomiasis (AAT) disease in animals. Till day, this disease is more difficult to treat and control due to lack of efficient vaccines and early diagnosis of the parasite infection. T.b.brucei Excretory/Secretory (ES) proteins were involved in pathogenesis and key for understanding the host-parasite interactions. Functions of T.b.brucei's ES proteins were poorly investigated and experimental identification is expensive and time-consuming. Bioinformatics approaches are cost-effective by facilitating the experimental analysis of potential drug targets for parasitic diseases. Here we applied several bioinformatics tools to predict and functionalize the annotation of 1104 ES proteins and immunoinformatics approaches carried out to predict and evaluate the epitopes in T.b.brucei. Secretory information, functional annotations and potential epitopes of each ES proteins were available at http://tbb.insilico.in. This study provides functional information of T.b.brucei for experimental studies to identify potential targets for diagnosis and therapeutics development.

摘要

布氏锥虫(T.b.brucei)是一种细胞外寄生虫,会导致动物的非洲锥虫病(AAT)。直到今天,由于缺乏有效的疫苗和寄生虫感染的早期诊断,这种疾病更难治疗和控制。布氏锥虫排泄/分泌(ES)蛋白参与发病机制,是了解宿主-寄生虫相互作用的关键。布氏锥虫 ES 蛋白的功能研究甚少,实验鉴定既昂贵又耗时。生物信息学方法具有成本效益,可以促进对寄生虫病潜在药物靶点的实验分析。在这里,我们应用了几种生物信息学工具来预测和功能化 1104 种 ES 蛋白的注释,并进行免疫信息学方法来预测和评估布氏锥虫中的表位。每个 ES 蛋白的分泌信息、功能注释和潜在表位都可以在 http://tbb.insilico.in 上获得。这项研究为实验研究提供了布氏锥虫的功能信息,以鉴定潜在的诊断和治疗开发目标。

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