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醛糖还原酶催化机制的新见解:一项量子力学/分子力学研究

New Insights into the Catalytic Mechanism of Aldose Reductase: A QM/MM Study.

作者信息

Dréanic Marie-Pierre, Edge Colin M, Tuttle Tell

机构信息

Medicines Research Centre, GlaxoSmithKline, Gunnels Wood Road, Stevenage, Hertfordshire SG1 2NY, U.K.

Department of Pure and Applied Chemistry, WestCHEM, University of Strathclyde, 295 Cathedral Street, Glasgow G1 1XL, U.K.

出版信息

ACS Omega. 2017 Sep 30;2(9):5737-5747. doi: 10.1021/acsomega.7b00815. Epub 2017 Sep 14.

Abstract

Aldose reductase is the first enzyme of the polyol pathway in which glucose is converted to fructose via sorbitol. The understanding of this key enzyme is important as it has been linked to some diabetes mellitus complications. The mechanism of the enzyme was investigated using a hybrid quantum mechanics/molecular mechanics (QM/MM) method. It was found that depending on the protonation state of His110 the mechanism can be concerted or stepwise and the proton donor can be either Tyr48 or His110. These findings are different from the previous theoretical studies based on QM/MM calculations using either AM1 or HF/4-31G, in which the reduction is, respectively, a stepwise or one-step process. The QM/MM energy barriers for the reduction of d-glyceraldehyde were evaluated at a B3LYP/6-31G* level for both HIP and HIE protonation states of His110. These were, respectively, 6.5 ± 2.2 and 16.7 ± 1.0 kcal/mol, which makes only the HIE protonation state consistent with the experimental value of 14.8 kcal/mol derived from kinetics experiments and makes Tyr48 the most probable proton donor.

摘要

醛糖还原酶是多元醇途径中的首个酶,在该途径中葡萄糖通过山梨醇转化为果糖。对这一关键酶的了解很重要,因为它与一些糖尿病并发症有关。使用量子力学/分子力学(QM/MM)混合方法研究了该酶的机制。研究发现,根据His110的质子化状态,反应机制可以是协同的或分步的,质子供体可以是Tyr48或His110。这些发现与之前基于使用AM1或HF/4 - 31G的QM/MM计算的理论研究不同,在那些研究中,还原反应分别是分步过程或一步过程。在B3LYP/6 - 31G*水平上,针对His110的HIP和HIE质子化状态评估了还原d - 甘油醛的QM/MM能垒。它们分别为6.5±2.2和16.7±1.0千卡/摩尔,这使得只有HIE质子化状态与动力学实验得出的14.8千卡/摩尔的实验值一致,并使Tyr48成为最可能的质子供体。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcf5/6643420/b065d4692416/ao-2017-008152_0010.jpg

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