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全外显子组测序揭示颅内椎基底动脉夹层(IVAD)队列中的已知和新变异。

Whole-exome sequencing reveals known and novel variants in a cohort of intracranial vertebral-basilar artery dissection (IVAD).

机构信息

Department of Interventional Neuroradiology, Beijing Neurosurgical Institute and Beijing Tiantan Hospital, Capital Medical University, Beijing, China.

Beijing Key Laboratory for Genetic Research of Skeletal Deformity, Beijing, China.

出版信息

J Hum Genet. 2018 Nov;63(11):1119-1128. doi: 10.1038/s10038-018-0496-x. Epub 2018 Aug 16.

DOI:10.1038/s10038-018-0496-x
PMID:30115950
Abstract

Intracranial vertebral-basilar artery dissection (IVAD) is an arterial disorder leading to life-threatening consequences. Genetic factors are known to be causative to certain syndromic forms of IVAD. However, systematic study of the molecular basis of sporadic and isolated IVAD is lacking. To identify genetic variants contributing to the etiology of IVAD, we enrolled a cohort of 44 unrelated cases with a clinical diagnosis of isolated IVAD and performed whole-exome sequencing (WES) for all the participants; a trio exome sequencing approach was used when samples from both parents were available. Four previously reported disease-causing heterozygous variants (three in COL3A1 and one in FBN1) and seven novel heterozygous variants in IVAD-related genes were identified. In addition, six variants in novel IVAD genes including two de novo heterozygous nonsynonymous variants (each in VPS52 and CDK18), two stop-gain variants (each in MYH9 and LYL1), and two heterozygous biallelic variants in TNXB were considered to be possibly contributing to the phenotype, with unknown significance according to the existing knowledge. A significantly higher mutational rate of IVAD candidate genes was observed in patients versus our in-house controls (P = 0.002) (DISCO study, http://www.discostudy.org/ , n = 2248). Our study provided a mutational landscape for patients with isolated IVAD.

摘要

颅内椎动脉夹层(IVAD)是一种导致危及生命后果的动脉疾病。遗传因素被认为是某些 IVAD 综合征形式的病因。然而,对散发性和孤立性 IVAD 的分子基础的系统研究还很缺乏。为了确定导致 IVAD 病因的遗传变异,我们招募了一个由 44 名无关联的临床诊断为孤立性 IVAD 的患者组成的队列,并对所有参与者进行了全外显子组测序(WES);当父母双方都有样本时,使用三对外显子组测序方法。在 IVAD 相关基因中发现了四个先前报道的致病杂合变体(三个在 COL3A1 中,一个在 FBN1 中)和七个新的杂合变体。此外,在包括两个新的 IVAD 基因中的六个变体中,两个为新生的杂合非同义变异(每个在 VPS52 和 CDK18 中),两个终止变异(每个在 MYH9 和 LYL1 中),以及 TNXB 中的两个杂合双等位基因变异被认为可能对表型有贡献,但根据现有知识,其意义未知。与我们的内部对照相比,患者的 IVAD 候选基因的突变率明显更高(P=0.002)(DISCO 研究,http://www.discostudy.org/,n=2248)。我们的研究为孤立性 IVAD 患者提供了一个突变景观。

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