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噬菌体Mu中的DNA倒位:倒位位点的特征分析

DNA inversion in bacteriophage Mu: characterization of the inversion site.

作者信息

Schmucker R, Ritthaler W, Stern B, Kamp D

出版信息

J Gen Virol. 1986 Jun;67 ( Pt 6):1123-33. doi: 10.1099/0022-1317-67-6-1123.

DOI:10.1099/0022-1317-67-6-1123
PMID:3011972
Abstract

Gin-mediated site-specific recombination promotes inversion of the G segment of phage Mu. The crossover takes place between two 34 bp-long inverted repeat sequences flanking the G segment. We have characterized the inversion site, the target for the site-specific recombination mechanism. An artificial invertible segment was constructed which consists of parts of the invertible segments of Mu and phage P1, which in this respect are largely homologous. Upon inversion of this hybrid segment the crossover site could be located, by DNA sequencing, in the ACCT sequence of the centre of symmetry in the inverted repeat in Mu. The hybrid Mu-P1 segment inverts at a lower frequency than its parental invertible segments probably because of the mismatches between the inverted repeats of Mu and P1. This suggests that base pairing between the inverted repeats is an intermediate step in recombination. Plasmids with subcloned G segments lacking the adjacent beta region of Mu or the corresponding region in P7, a relative of P1, are deficient in inversion. By analysis through site-specific mutagenesis of Mu DNA, an enhancer element with multiple recognition sites was identified which is necessary for efficient inversion. This component of the inversion site was located in a 170 bp segment within the Mu beta region, 30 bp to the right of the inverted repeat sequence, but can be separated from the crossover site by a 1200 bp insertion without losing its effect.

摘要

gin介导的位点特异性重组促进噬菌体Mu的G片段倒位。交叉发生在G片段两侧两个34bp长的反向重复序列之间。我们已经对倒位位点进行了表征,它是位点特异性重组机制的靶点。构建了一个人工可逆片段,它由Mu和噬菌体P1的可逆片段的部分组成,在这方面它们在很大程度上是同源的。通过DNA测序,在这个杂交片段倒位时,交叉位点可以定位在Mu反向重复序列对称中心的ACCT序列中。杂交的Mu-P1片段倒位频率低于其亲本可逆片段,这可能是因为Mu和P1的反向重复序列之间存在错配。这表明反向重复序列之间的碱基配对是重组的中间步骤。缺少Mu相邻β区域或P1的亲属P7中相应区域的亚克隆G片段的质粒在倒位方面存在缺陷。通过对Mu DNA进行位点特异性诱变分析,鉴定出一个具有多个识别位点的增强元件,它对于有效倒位是必需的。这个倒位位点的组成部分位于Muβ区域内一个170bp的片段中,在反向重复序列右侧30bp处,但可以通过1200bp的插入与交叉位点分开而不失去其作用。

相似文献

1
DNA inversion in bacteriophage Mu: characterization of the inversion site.噬菌体Mu中的DNA倒位:倒位位点的特征分析
J Gen Virol. 1986 Jun;67 ( Pt 6):1123-33. doi: 10.1099/0022-1317-67-6-1123.
2
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Site-specific recombination by Gin of bacteriophage Mu: inversions and deletions.噬菌体Mu的Gin介导的位点特异性重组:倒位和缺失
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A genetic switch in vitro: DNA inversion by Gin protein of phage Mu.体外的基因开关:噬菌体Mu的Gin蛋白介导的DNA倒位
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Bacteriophage P1 carries two related sets of genes determining its host range in the invertible C segment of its genome.噬菌体P1在其基因组的可逆C片段中携带两组相关基因,这些基因决定了它的宿主范围。
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Crossover sites cix for inversion of the invertible DNA segment C on the bacteriophage P7 genome.噬菌体P7基因组上可倒位DNA片段C发生倒位时的交换位点cix。
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The invertible G segment of phage mu.噬菌体μ的可逆G片段。
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Site-specific recombination in phage mu.噬菌体μ中的位点特异性重组。
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引用本文的文献

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Bacterial 'Grounded' Prophages: Hotspots for Genetic Renovation and Innovation.细菌“固定”原噬菌体:基因革新与创新的热点
Front Genet. 2019 Feb 12;10:65. doi: 10.3389/fgene.2019.00065. eCollection 2019.
2
Identification and Molecular Characterisation of a Novel Mu-Like Bacteriophage, SfMu, of Shigella flexneri.福氏志贺氏菌新型类μ噬菌体SfMu的鉴定与分子特征分析
PLoS One. 2015 Apr 22;10(4):e0124053. doi: 10.1371/journal.pone.0124053. eCollection 2015.
3
DNA sequence of the site-specific recombination function cin of phage P7.
噬菌体P7位点特异性重组功能cin的DNA序列。
Nucleic Acids Res. 1988 Jul 11;16(13):6246. doi: 10.1093/nar/16.13.6246.
4
Site-specific recombination in bacteriophage Mu: characterization of binding sites for the DNA invertase Gin.
EMBO J. 1988 Apr;7(4):1219-27. doi: 10.1002/j.1460-2075.1988.tb02934.x.
5
Isolation and characterization of unusual gin mutants.异常杜松子酒突变体的分离与鉴定
EMBO J. 1988 Dec 1;7(12):3983-9. doi: 10.1002/j.1460-2075.1988.tb03286.x.
6
Mutational analysis of a prokaryotic recombinational enhancer element with two functions.具有两种功能的原核重组增强子元件的突变分析。
EMBO J. 1989 Feb;8(2):577-85. doi: 10.1002/j.1460-2075.1989.tb03412.x.