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深入了解高耐 CO 性红杆菌 JA756 的碳酸酐酶和自养二氧化碳固定途径。

Insights into the carbonic anhydrases and autotrophic carbon dioxide fixation pathways of high CO tolerant Rhodovulum viride JA756.

机构信息

Department of Plant Sciences, School of Life Sciences, University of Hyderabad, P.O. Central University, Hyderabad, 500 046, India.

School of Chemistry, University of Hyderabad, P.O. Central University, Hyderabad, 500046, India.

出版信息

Microbiol Res. 2018 Oct;215:130-140. doi: 10.1016/j.micres.2018.07.006. Epub 2018 Jul 20.

Abstract

Biofixation of CO is being extensively investigated to solve the global warming problem. Purple non-sulfur bacteria are fast growers that consume CO and produce beneficial biomass. Better the growth at higher CO levels, more efficient are the strains for biofixation. Nine among fifty strains that were analyzed at elevated CO levels responded with better growth. Considering its enhanced growth at high CO and metabolic versatility, Rhodovulum viride strain JA756 was chosen to make further studies. Strain JA756 tolerates up to 50% (v/v) CO with its optimum between 20-40% (v/v), yielding a biomass of 3.4 g. L. The pattern of specific enzyme activity of carbonic anhydrase corresponded well with that of its growth. To gain insights into the genomic composition and genes related to carbonic anhydrases and CO fixation, draft genome sequencing of JA756 was carried out which revealed the presence of two non-homologous genes encoding for β and γ carbonic anhydrases, both of which are assumed to be implicated in maintaining intracellular inorganic carbon concentration at equilibrium. Most of the genes involved in the Calvin pathway, reductive tricarboxylic acid pathway, 3-hydroxypropionate bicycle and C pathways were found in the draft genome. While the experimental determinations of active roles of two of these pathways are still underway, the expression of key genes of Calvin and C pathway suggest their functional role in the organism. Owing to its metabolic versatility, JA756 can be advantageous for biological CO assimilation facilities located by the coastline, inland and also at wide ranges of CO concentrations.

摘要

正在广泛研究 CO 的生物固定化以解决全球变暖问题。紫色非硫细菌生长迅速,能消耗 CO 并产生有益的生物质。在更高的 CO 水平下生长得越好,生物固定化的菌株效率就越高。在升高的 CO 水平下分析的 50 株菌株中有 9 株表现出更好的生长。考虑到其在高 CO 下的增强生长和代谢多功能性,选择 Rhodovulum viride 菌株 JA756 进行进一步研究。JA756 菌株能耐受高达 50%(v/v)的 CO,其最佳生长范围为 20-40%(v/v),产生 3.4 g/L 的生物质。碳酸酐酶的特定酶活性模式与其生长模式非常吻合。为了深入了解与碳酸酐酶和 CO 固定化相关的基因组组成和基因,对 JA756 进行了草图基因组测序,结果表明存在两个编码β和γ碳酸酐酶的非同源基因,这两个基因都被认为与维持细胞内无机碳浓度平衡有关。卡尔文途径、还原三羧酸途径、3-羟基丙酸自行车和 C 途径中涉及的大多数基因都存在于草图基因组中。虽然这些途径中两个途径的活性作用的实验测定仍在进行中,但卡尔文和 C 途径的关键基因的表达表明它们在该生物体中的功能作用。由于其代谢多功能性,JA756 可以有利于位于海岸线、内陆和广泛 CO 浓度范围内的生物 CO 同化设施。

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