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具有大质子极化率的羧酸 - 视黄醛席夫碱氢键中质子转移的热力学

Thermodynamics of proton transfer in carboxylic acid-retinal Schiff base hydrogen bonds with large proton polarizability.

作者信息

Merz H, Zundel G

出版信息

Biochem Biophys Res Commun. 1986 Jul 31;138(2):819-25. doi: 10.1016/s0006-291x(86)80570-8.

DOI:10.1016/s0006-291x(86)80570-8
PMID:3017339
Abstract

During the photocycle of bacteriorhodopsin (BR) the chromophore, a retinal Schiff base, is deprotonated. Simultaneously an asp residue is protonated. These results suggest that this deprotonation occurs via a Schiff base - asp hydrogen bond. Therefore, we studied carboxylic acid - retinal Schiff base model systems in CCl4 using IR spectroscopy. The IR spectra show that double minimum proton potentials are present in the OH ... N in equilibrium with O- ... HN+ H-bonds formed and that the proton can easily be shifted in these bonds by local electrical fields. The thermodynamic data of H-bond formation and proton transfer within these H-bonds are determined. On the basis of these data a hypothesis is developed with regard to the molecular mechanism of the deprotonation of the Schiff base of BR.

摘要

在细菌视紫红质(BR)的光循环过程中,发色团(一种视黄醛席夫碱)会发生去质子化。同时,一个天冬氨酸残基会被质子化。这些结果表明,这种去质子化是通过席夫碱 - 天冬氨酸氢键发生的。因此,我们使用红外光谱法研究了四氯化碳中的羧酸 - 视黄醛席夫碱模型体系。红外光谱表明,在形成的O-... HN⁺氢键与OH... N处于平衡状态时存在双势阱质子势,并且质子可以通过局部电场在这些键中轻松移动。确定了这些氢键形成和质子转移的热力学数据。基于这些数据,针对BR席夫碱去质子化的分子机制提出了一个假设。

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Thermodynamics of proton transfer in carboxylic acid-retinal Schiff base hydrogen bonds with large proton polarizability.具有大质子极化率的羧酸 - 视黄醛席夫碱氢键中质子转移的热力学
Biochem Biophys Res Commun. 1986 Jul 31;138(2):819-25. doi: 10.1016/s0006-291x(86)80570-8.
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Proton transfer from Asp-96 to the bacteriorhodopsin Schiff base is caused by a decrease of the pKa of Asp-96 which follows a protein backbone conformational change.天冬氨酸96(Asp-96)向细菌视紫红质席夫碱的质子转移是由Asp-96的pKa降低引起的,而这种降低是在蛋白质主链构象变化之后发生的。
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Factors affecting the formation of an M-like intermediate in the photocycle of 13-cis-bacteriorhodopsin.影响13-顺式细菌视紫红质光循环中M样中间体形成的因素。
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Determination of retinal chromophore structure in bacteriorhodopsin with resonance Raman spectroscopy.利用共振拉曼光谱法测定细菌视紫红质中视网膜发色团的结构。
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The complex extracellular domain regulates the deprotonation and reprotonation of the retinal Schiff base during the bacteriorhodopsin photocycle.复杂的细胞外结构域在细菌视紫红质光循环过程中调节视黄醛席夫碱的去质子化和再质子化。
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Fourier transform infrared evidence for Schiff base alteration in the first step of the bacteriorhodopsin photocycle.傅里叶变换红外光谱证明细菌视紫红质光循环第一步中席夫碱的变化。
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Hydrogen-bonding interaction of the protonated schiff base with halides in a chloride-pumping bacteriorhodopsin mutant.质子化席夫碱与氯化物泵浦细菌视紫红质突变体中的卤化物的氢键相互作用。
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Suppression of the back proton-transfer from Asp85 to the retinal Schiff base in bacteriorhodopsin: a theoretical analysis of structural elements.细菌视紫红质中从Asp85到视黄醛席夫碱的反向质子转移的抑制:结构元件的理论分析
J Struct Biol. 2007 Mar;157(3):454-69. doi: 10.1016/j.jsb.2006.10.007. Epub 2006 Oct 20.

引用本文的文献

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Time-resolved Fourier transform infrared spectroscopy of the polarizable proton continua and the proton pump mechanism of bacteriorhodopsin.嗜盐菌视紫红质的可极化质子连续区的时间分辨傅里叶变换红外光谱及质子泵机制
Biophys J. 2001 Feb;80(2):961-71. doi: 10.1016/S0006-3495(01)76075-4.
2
Effect of intermolecular orientation upon proton transfer within a polarizable medium.分子间取向对可极化介质中质子转移的影响。
Biophys J. 1991 Oct;60(4):874-83. doi: 10.1016/S0006-3495(91)82121-X.