• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

复杂的细胞外结构域在细菌视紫红质光循环过程中调节视黄醛席夫碱的去质子化和再质子化。

The complex extracellular domain regulates the deprotonation and reprotonation of the retinal Schiff base during the bacteriorhodopsin photocycle.

作者信息

Brown L S, Váró G, Hatanaka M, Sasaki J, Kandori H, Maeda A, Friedman N, Sheves M, Nedleman R, Lanyi J K

机构信息

Department of Physiology and Biophysics, University of California, Irvine 92717, USA.

出版信息

Biochemistry. 1995 Oct 3;34(39):12903-11. doi: 10.1021/bi00039a053.

DOI:10.1021/bi00039a053
PMID:7548047
Abstract

During the L-->M reaction of the bacteriorhodopsin photocycle the proton of the retinal Schiff base is transferred to the anionic D85. This step, together with the subsequent reprotonation of the Schiff base from D96 in the M-->N reaction, results in the translocation of a proton across the membrane. The first of these critical proton transfers occurs in an extended hydrogen-bonded complex containing two negatively charged residues (D85 and D212), two positively charged groups (the Schiff base and R82), and coordinated water. We simplified this region by replacing D212 and R82 with neutral residues, leaving only the proton donor and acceptor as charged groups. The D212N/R82Q mutant shows essentially normal proton transport, but in the photocycle neither of this protein nor of the D212N/R82Q/D96N triple mutant does a deprotonated Schiff base (the M intermediate) accumulate. Instead, the photocycle contains only the K, L, and N intermediates. Infrared difference spectra of D212N/R82Q and D212N/R82Q/D96N demonstrate that although D96 becomes deprotonated in N, D85 remains unprotonated. On the other hand, M is produced at pH > 8, where according to independent evidence the L<==>M equilibrium should shift toward M. Likewise, M is restored in the photocycle when the retinal is replaced with the 14-fluoro analogue that lowers the pKa of the protonated Schiff base, and now D85 becomes protonated as in the wild type.(ABSTRACT TRUNCATED AT 250 WORDS)

摘要

在细菌视紫红质光循环的L→M反应过程中,视黄醛席夫碱的质子转移至阴离子态的D85。这一步骤,连同随后在M→N反应中席夫碱从D96处的再质子化,导致质子跨膜转运。这些关键质子转移中的第一步发生在一个扩展的氢键复合物中,该复合物包含两个带负电荷的残基(D85和D212)、两个带正电荷的基团(席夫碱和R82)以及配位水。我们通过用中性残基取代D212和R82简化了该区域,仅留下质子供体和受体作为带电基团。D212N/R82Q突变体显示出基本正常的质子转运,但在光循环中,该蛋白以及D212N/R82Q/D96N三重突变体均未积累去质子化的席夫碱(M中间体)。相反,光循环仅包含K、L和N中间体。D212N/R82Q和D212N/R82Q/D96N的红外差光谱表明,尽管D96在N态时去质子化,但D85仍未质子化。另一方面,在pH > 8时会产生M,根据独立证据,此时L⇌M平衡应向M移动。同样,当视黄醛被14 - 氟类似物取代时,光循环中会恢复M,该类似物降低了质子化席夫碱的pKa,此时D85如野生型一样质子化。(摘要截断于250字)

相似文献

1
The complex extracellular domain regulates the deprotonation and reprotonation of the retinal Schiff base during the bacteriorhodopsin photocycle.复杂的细胞外结构域在细菌视紫红质光循环过程中调节视黄醛席夫碱的去质子化和再质子化。
Biochemistry. 1995 Oct 3;34(39):12903-11. doi: 10.1021/bi00039a053.
2
The retinal Schiff base-counterion complex of bacteriorhodopsin: changed geometry during the photocycle is a cause of proton transfer to aspartate 85.细菌视紫红质的视网膜席夫碱-抗衡离子复合物:光循环过程中几何结构的变化是质子转移至天冬氨酸85的原因。
Biochemistry. 1994 Oct 11;33(40):12001-11. doi: 10.1021/bi00206a001.
3
Proton translocation mechanism and energetics in the light-driven pump bacteriorhodopsin.光驱动泵视紫红质中的质子转运机制与能量学
Biochim Biophys Acta. 1993 Dec 7;1183(2):241-61. doi: 10.1016/0005-2728(93)90226-6.
4
Proton transfer from Asp-96 to the bacteriorhodopsin Schiff base is caused by a decrease of the pKa of Asp-96 which follows a protein backbone conformational change.天冬氨酸96(Asp-96)向细菌视紫红质席夫碱的质子转移是由Asp-96的pKa降低引起的,而这种降低是在蛋白质主链构象变化之后发生的。
Biochemistry. 1993 Mar 2;32(8):1981-90. doi: 10.1021/bi00059a015.
5
Connectivity of the retinal Schiff base to Asp85 and Asp96 during the bacteriorhodopsin photocycle: the local-access model.细菌视紫红质光循环过程中视网膜席夫碱与Asp85和Asp96的连接性:局部可及模型
Biophys J. 1998 Sep;75(3):1455-65. doi: 10.1016/S0006-3495(98)74064-0.
6
Energy coupling in an ion pump. The reprotonation switch of bacteriorhodopsin.离子泵中的能量偶联。细菌视紫红质的再质子化开关。
J Mol Biol. 1994 Nov 4;243(4):621-38. doi: 10.1016/0022-2836(94)90037-x.
7
Atomic resolution structures of bacteriorhodopsin photocycle intermediates: the role of discrete water molecules in the function of this light-driven ion pump.细菌视紫红质光循环中间体的原子分辨率结构:离散水分子在这种光驱动离子泵功能中的作用。
Biochim Biophys Acta. 2000 Aug 30;1460(1):133-56. doi: 10.1016/s0005-2728(00)00135-3.
8
Arginine-82 regulates the pKa of the group responsible for the light-driven proton release in bacteriorhodopsin.精氨酸-82调节负责细菌视紫红质中光驱动质子释放的基团的pKa。
Biophys J. 1996 Aug;71(2):1011-23. doi: 10.1016/S0006-3495(96)79302-5.
9
Estimated acid dissociation constants of the Schiff base, Asp-85, and Arg-82 during the bacteriorhodopsin photocycle.细菌视紫红质光循环过程中席夫碱、天冬氨酸-85和精氨酸-82的估计酸解离常数。
Biophys J. 1993 Jul;65(1):124-30. doi: 10.1016/S0006-3495(93)81064-6.
10
The two consecutive M substates in the photocycle of bacteriorhodopsin are affected specifically by the D85N and D96N residue replacements.细菌视紫红质光循环中两个连续的M亚态受到D85N和D96N残基置换的特异性影响。
Photochem Photobiol. 1992 Dec;56(6):1049-55. doi: 10.1111/j.1751-1097.1992.tb09728.x.

引用本文的文献

1
Aspartate-histidine interaction in the retinal schiff base counterion of the light-driven proton pump of Exiguobacterium sibiricum.极端嗜热菌光驱动质子泵的视网膜席夫碱抗衡离子中天冬氨酸-组氨酸相互作用。
Biochemistry. 2012 Jul 24;51(29):5748-62. doi: 10.1021/bi300409m. Epub 2012 Jul 10.
2
Bioinformatic and mutational analysis of channelrhodopsin-2 protein cation-conducting pathway.通道蛋白视紫红质-2 蛋白阳离子传导途径的生物信息学和突变分析。
J Biol Chem. 2012 Feb 10;287(7):4818-25. doi: 10.1074/jbc.M111.326207. Epub 2011 Dec 2.
3
Coordinating the structural rearrangements associated with unidirectional proton transfer in the bacteriorhodopsin photocycle induced by deprotonation of the proton-release group: a time-resolved difference FTIR spectroscopic study.
协调与质子释放基团去质子化诱导的菌紫质光循环中单向质子转移相关的结构重排:时间分辨差频 FTIR 光谱研究。
Biochemistry. 2010 Apr 20;49(15):3273-81. doi: 10.1021/bi901757y.
4
A role for internal water molecules in proton affinity changes in the Schiff base and Asp85 for one-way proton transfer in bacteriorhodopsin.细菌视紫红质中内部水分子在席夫碱和天冬氨酸85质子亲和力变化以实现单向质子转移过程中的作用。
Photochem Photobiol. 2008 Jul-Aug;84(4):1038-45. doi: 10.1111/j.1751-1097.2008.00377.x. Epub 2008 Jun 28.
5
Factors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations.影响蛋白质中电子和质子转移能量学的因素。从计算中能学到什么。
Biochim Biophys Acta. 2006 Aug;1757(8):942-68. doi: 10.1016/j.bbabio.2006.06.005. Epub 2006 Jun 17.
6
Characterization and photochemistry of 13-desmethyl bacteriorhodopsin.13-去甲基细菌视紫红质的表征与光化学
J Phys Chem B. 2005 Aug 25;109(33):16142-52. doi: 10.1021/jp052124+.
7
Two groups control light-induced Schiff base deprotonation and the proton affinity of Asp85 in the Arg82 his mutant of bacteriorhodopsin.两组控制光诱导席夫碱去质子化和 Arg82His 突变菌紫质中 Asp85 的质子亲和力。
Biophys J. 1999 Nov;77(5):2750-63. doi: 10.1016/s0006-3495(99)77108-0.
8
Bioenergetics of the Archaea.古菌的生物能量学
Microbiol Mol Biol Rev. 1999 Sep;63(3):570-620. doi: 10.1128/MMBR.63.3.570-620.1999.
9
Nature of the chromophore binding site of bacteriorhodopsin: the potential role of Arg82 as a principal counterion.细菌视紫红质发色团结合位点的性质:精氨酸82作为主要抗衡离子的潜在作用。
Biophys J. 1999 May;76(5):2370-89. doi: 10.1016/S0006-3495(99)77394-7.
10
Localization and orientation of functional water molecules in bacteriorhodopsin as revealed by polarized Fourier transform infrared spectroscopy.偏振傅里叶变换红外光谱揭示细菌视紫红质中功能性水分子的定位与取向
Biophys J. 1997 Aug;73(2):1001-6. doi: 10.1016/S0006-3495(97)78133-5.