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[应用蛋白质组学技术筛选特发性肺纤维化患者血清生物标志物]

[Screening on serum biomarkers in idiopathic pulmonary fibrosis patients by proteomics technology].

作者信息

Zhang Y, Wang C C, Niu R

机构信息

Department of Respiration, The Second Hospital of Shandong University, Jinan 250000, China.

出版信息

Zhonghua Liu Xing Bing Xue Za Zhi. 2018 Aug 10;39(8):1117-1120. doi: 10.3760/cma.j.issn.0254-6450.2018.08.020.

Abstract

Applying the proteomics technology to identify proteins differentially in serums of idiopathic pulmonary fibrosis patients and normal population. The study included serum samples from idiopathic pulmonary fibrosis group and normal controlled group with 30 cases of each, from the Second Hospital of Shandong University, between October 2014 and October 2015. Proteins differentially expressed in serums were quantified by the isobaric tags for relative and absolute quantization coupled with two-dimensional liquid chromatography/tandem mass spectrometry technology. The proteins were analyzed in terms of molecular function, cell location and biological processes for showing the key protein molecules which were related to the development of idiopathic pulmonary fibrosis. A total of 490 kinds of proteins (with confidence coefficient above 95%) were identified by mass spectrometry and 25 kinds of differentially expressed proteins were found. Compared with the control group, we found 4 types of up-regulated proteins and 21 down-regulated ones in the serum of idiopathic pulmonary fibrosis patients. Data from the Gene ontology analysis showed that most differentially expressed proteins were in the extracellular region (92%) while pathway enrichment analysis showed that most proteins were involved in the complement and coagulation cascade pathway. Proteins related to the complement system coagulation cascade pathway, and the proteins function need to be further studied.

摘要

应用蛋白质组学技术鉴定特发性肺纤维化患者和正常人群血清中的差异蛋白。该研究纳入了山东大学第二医院2014年10月至2015年10月期间的特发性肺纤维化组和正常对照组的血清样本,每组各30例。采用相对和绝对定量的等压标签结合二维液相色谱/串联质谱技术对血清中差异表达的蛋白质进行定量。从分子功能、细胞定位和生物学过程方面对这些蛋白质进行分析,以揭示与特发性肺纤维化发生发展相关的关键蛋白质分子。通过质谱鉴定出总共490种蛋白质(置信系数高于95%),发现25种差异表达蛋白质。与对照组相比,在特发性肺纤维化患者血清中发现4种上调蛋白和21种下调蛋白。基因本体分析数据显示,大多数差异表达蛋白位于细胞外区域(92%),而通路富集分析表明大多数蛋白质参与补体和凝血级联途径。与补体系统凝血级联途径相关的蛋白质,其功能有待进一步研究。

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