Hu GaoFeng, Lv QianWen, Yan JiaXiu, Chen LiJun, Du Juan, Zhao Ke, Xu Wei
Department of Clinical Laboratory The First Hospital of Jilin University Changchun China.
Department of Neonatology The First Hospital of Jilin University Changchun China.
FEBS Open Bio. 2018 Aug 30;8(9):1508-1523. doi: 10.1002/2211-5463.12496. eCollection 2018 Sep.
Integrated studies of accumulated data can be performed to obtain more reliable information and more feasible measures for investigating potential diagnostic biomarkers of gastric cancer (GC) and to explore related molecular mechanisms. This study aimed to identify microRNAs involved in GC by integrating data from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus. Through our analysis, we identified hsa-miR-17 (miR-17) as a suitable candidate. We performed a meta-analysis of published studies and analyzed clinical data from TCGA to evaluate the clinical significance and diagnostic value of miR-17 in GC. miR-17 was found to be upregulated in GC tissues and exhibited a favorable value in diagnosing GC. In addition, we predicted that 288 target genes of miR-17 participate in GC-related pathways. Enrichment of Kyoto Encyclopedia of Genes and Genomes pathway, Gene Ontology analysis, and protein-protein interaction analysis of the 288 target genes of miR-17 were also performed. Through this study, we identified possible core pathways and genes that may play an important role in GC. The possible core pathways include the cAMP, phosphoinositide-3-kinase-Akt, Rap1, and mitogen-activated protein kinase signaling pathways. miR-17 may be involved in several biological processes, including DNA template transcription, the regulation of transcription from RNA polymerase II promoters, and cell adhesion. In addition, cellular components (such as cytoplasm and plasma membrane) and molecular functions (such as protein binding and metal ion binding) also seemed to be regulated by miR-17.
可以对积累的数据进行综合研究,以获取更可靠的信息和更可行的措施,用于研究胃癌(GC)潜在的诊断生物标志物,并探索相关分子机制。本研究旨在通过整合来自癌症基因组图谱(TCGA)和基因表达综合数据库的数据,鉴定参与胃癌的微小RNA。通过我们的分析,我们确定hsa-miR-17(miR-17)为合适的候选物。我们对已发表的研究进行了荟萃分析,并分析了TCGA的临床数据,以评估miR-17在胃癌中的临床意义和诊断价值。发现miR-17在胃癌组织中上调,并在诊断胃癌方面具有良好的价值。此外,我们预测miR-17的288个靶基因参与胃癌相关途径。还对miR-17的288个靶基因进行了京都基因与基因组百科全书通路富集分析、基因本体分析和蛋白质-蛋白质相互作用分析。通过这项研究,我们确定了可能在胃癌中起重要作用的核心途径和基因。可能的核心途径包括环磷酸腺苷、磷脂酰肌醇-3-激酶-Akt、Rap1和丝裂原活化蛋白激酶信号通路。miR-17可能参与多种生物学过程,包括DNA模板转录、RNA聚合酶II启动子转录的调控和细胞粘附。此外,细胞成分(如细胞质和质膜)和分子功能(如蛋白质结合和金属离子结合)似乎也受miR-17调控。