• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

MicroRNA-17作为一种有前景的胃癌诊断生物标志物:一项结合TCGA、GEO、荟萃分析和生物信息学的研究

MicroRNA-17 as a promising diagnostic biomarker of gastric cancer: An investigation combining TCGA, GEO, meta-analysis, and bioinformatics.

作者信息

Hu GaoFeng, Lv QianWen, Yan JiaXiu, Chen LiJun, Du Juan, Zhao Ke, Xu Wei

机构信息

Department of Clinical Laboratory The First Hospital of Jilin University Changchun China.

Department of Neonatology The First Hospital of Jilin University Changchun China.

出版信息

FEBS Open Bio. 2018 Aug 30;8(9):1508-1523. doi: 10.1002/2211-5463.12496. eCollection 2018 Sep.

DOI:10.1002/2211-5463.12496
PMID:30186751
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6120248/
Abstract

Integrated studies of accumulated data can be performed to obtain more reliable information and more feasible measures for investigating potential diagnostic biomarkers of gastric cancer (GC) and to explore related molecular mechanisms. This study aimed to identify microRNAs involved in GC by integrating data from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus. Through our analysis, we identified hsa-miR-17 (miR-17) as a suitable candidate. We performed a meta-analysis of published studies and analyzed clinical data from TCGA to evaluate the clinical significance and diagnostic value of miR-17 in GC. miR-17 was found to be upregulated in GC tissues and exhibited a favorable value in diagnosing GC. In addition, we predicted that 288 target genes of miR-17 participate in GC-related pathways. Enrichment of Kyoto Encyclopedia of Genes and Genomes pathway, Gene Ontology analysis, and protein-protein interaction analysis of the 288 target genes of miR-17 were also performed. Through this study, we identified possible core pathways and genes that may play an important role in GC. The possible core pathways include the cAMP, phosphoinositide-3-kinase-Akt, Rap1, and mitogen-activated protein kinase signaling pathways. miR-17 may be involved in several biological processes, including DNA template transcription, the regulation of transcription from RNA polymerase II promoters, and cell adhesion. In addition, cellular components (such as cytoplasm and plasma membrane) and molecular functions (such as protein binding and metal ion binding) also seemed to be regulated by miR-17.

摘要

可以对积累的数据进行综合研究,以获取更可靠的信息和更可行的措施,用于研究胃癌(GC)潜在的诊断生物标志物,并探索相关分子机制。本研究旨在通过整合来自癌症基因组图谱(TCGA)和基因表达综合数据库的数据,鉴定参与胃癌的微小RNA。通过我们的分析,我们确定hsa-miR-17(miR-17)为合适的候选物。我们对已发表的研究进行了荟萃分析,并分析了TCGA的临床数据,以评估miR-17在胃癌中的临床意义和诊断价值。发现miR-17在胃癌组织中上调,并在诊断胃癌方面具有良好的价值。此外,我们预测miR-17的288个靶基因参与胃癌相关途径。还对miR-17的288个靶基因进行了京都基因与基因组百科全书通路富集分析、基因本体分析和蛋白质-蛋白质相互作用分析。通过这项研究,我们确定了可能在胃癌中起重要作用的核心途径和基因。可能的核心途径包括环磷酸腺苷、磷脂酰肌醇-3-激酶-Akt、Rap1和丝裂原活化蛋白激酶信号通路。miR-17可能参与多种生物学过程,包括DNA模板转录、RNA聚合酶II启动子转录的调控和细胞粘附。此外,细胞成分(如细胞质和质膜)和分子功能(如蛋白质结合和金属离子结合)似乎也受miR-17调控。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/942f11823464/FEB4-8-1508-g012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/f6ef34d7e787/FEB4-8-1508-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/8e2b821d871c/FEB4-8-1508-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/8d29067fab26/FEB4-8-1508-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/7860e2038bb9/FEB4-8-1508-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/ed0a4a986559/FEB4-8-1508-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/b5f1df45a023/FEB4-8-1508-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/ba3abca0c88f/FEB4-8-1508-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/0205027db10f/FEB4-8-1508-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/ce9ace289a11/FEB4-8-1508-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/356cba6b50e2/FEB4-8-1508-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/f394acc41182/FEB4-8-1508-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/942f11823464/FEB4-8-1508-g012.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/f6ef34d7e787/FEB4-8-1508-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/8e2b821d871c/FEB4-8-1508-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/8d29067fab26/FEB4-8-1508-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/7860e2038bb9/FEB4-8-1508-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/ed0a4a986559/FEB4-8-1508-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/b5f1df45a023/FEB4-8-1508-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/ba3abca0c88f/FEB4-8-1508-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/0205027db10f/FEB4-8-1508-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/ce9ace289a11/FEB4-8-1508-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/356cba6b50e2/FEB4-8-1508-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/f394acc41182/FEB4-8-1508-g011.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4095/6120248/942f11823464/FEB4-8-1508-g012.jpg

相似文献

1
MicroRNA-17 as a promising diagnostic biomarker of gastric cancer: An investigation combining TCGA, GEO, meta-analysis, and bioinformatics.MicroRNA-17作为一种有前景的胃癌诊断生物标志物:一项结合TCGA、GEO、荟萃分析和生物信息学的研究
FEBS Open Bio. 2018 Aug 30;8(9):1508-1523. doi: 10.1002/2211-5463.12496. eCollection 2018 Sep.
2
Integrating MicroRNA Expression Profiling Studies to Systematically Evaluate the Diagnostic Value of MicroRNAs in Pancreatic Cancer and Validate Their Prognostic Significance with the Cancer Genome Atlas Data.整合微小RNA表达谱研究以系统评估微小RNA在胰腺癌中的诊断价值,并利用癌症基因组图谱数据验证其预后意义。
Cell Physiol Biochem. 2018;49(2):678-695. doi: 10.1159/000493033. Epub 2018 Aug 30.
3
Clinical value of miR-145-5p in NSCLC and potential molecular mechanism exploration: A retrospective study based on GEO, qRT-PCR, and TCGA data.miR-145-5p在非小细胞肺癌中的临床价值及潜在分子机制探索:一项基于GEO、qRT-PCR和TCGA数据的回顾性研究
Tumour Biol. 2017 Mar;39(3):1010428317691683. doi: 10.1177/1010428317691683.
4
Clinical value of miR-198-5p in lung squamous cell carcinoma assessed using microarray and RT-qPCR.采用微阵列和 RT-qPCR 评估 miR-198-5p 在肺鳞癌中的临床价值。
World J Surg Oncol. 2018 Feb 2;16(1):22. doi: 10.1186/s12957-018-1320-y.
5
The expression of miR-375 in prostate cancer: A study based on GEO, TCGA data and bioinformatics analysis.miR-375 在前列腺癌中的表达:基于 GEO、TCGA 数据和生物信息学分析的研究。
Pathol Res Pract. 2019 Jun;215(6):152375. doi: 10.1016/j.prp.2019.03.004. Epub 2019 Mar 5.
6
Diagnostic significance and potential function of miR-338-5p in hepatocellular carcinoma: A bioinformatics study with microarray and RNA sequencing data.miR-338-5p 在肝细胞癌中的诊断意义及潜在功能:基于基因芯片和 RNA 测序数据的生物信息学研究。
Mol Med Rep. 2018 Feb;17(2):2297-2312. doi: 10.3892/mmr.2017.8125. Epub 2017 Nov 21.
7
MiR-375: A prospective regulator in medullary thyroid cancer based on microarray data and bioinformatics analyses.基于微阵列数据和生物信息学分析,miR-375:甲状腺髓样癌中的一种潜在调节因子。
Pathol Res Pract. 2017 Nov;213(11):1344-1354. doi: 10.1016/j.prp.2017.09.024. Epub 2017 Sep 27.
8
Integrated miRNA profiling and bioinformatics analyses reveal upregulated miRNAs in gastric cancer.整合的微小RNA分析和生物信息学分析揭示了胃癌中上调的微小RNA。
Oncol Lett. 2019 Aug;18(2):1979-1988. doi: 10.3892/ol.2019.10495. Epub 2019 Jun 19.
9
Potential role of microRNA‑223‑3p in the tumorigenesis of hepatocellular carcinoma: A comprehensive study based on data mining and bioinformatics.miR-223-3p 在肝癌发生发展中的潜在作用:基于数据挖掘和生物信息学的综合研究。
Mol Med Rep. 2018 Feb;17(2):2211-2228. doi: 10.3892/mmr.2017.8167. Epub 2017 Nov 27.
10
A panel of collagen genes are associated with prognosis of patients with gastric cancer and regulated by microRNA-29c-3p: an integrated bioinformatics analysis and experimental validation.一组胶原蛋白基因与胃癌患者的预后相关,并受微小RNA-29c-3p调控:一项综合生物信息学分析及实验验证
Cancer Manag Res. 2019 May 24;11:4757-4772. doi: 10.2147/CMAR.S198331. eCollection 2019.

引用本文的文献

1
Upregulation of miR-17-3p is associated with HbF in patients with β-thalassemia and induces γ-globin expression by targeting BCL11A.miR-17-3p的上调与β地中海贫血患者的胎儿血红蛋白(HbF)相关,并通过靶向BCL11A诱导γ珠蛋白表达。
Orphanet J Rare Dis. 2025 May 30;20(1):260. doi: 10.1186/s13023-025-03806-0.
2
MicroRNA-34a Mediates the Aldosterone-Induced Acceleration of Endothelial Senescence.微小RNA-34a介导醛固酮诱导的内皮细胞衰老加速
Int J Hypertens. 2025 Feb 26;2025:2339598. doi: 10.1155/ijhy/2339598. eCollection 2025.
3
Non-Coding RNA as Biomarkers and Their Role in the Pathogenesis of Gastric Cancer-A Narrative Review.

本文引用的文献

1
Post-transcriptional Regulation of Genes Related to Biological Behaviors of Gastric Cancer by Long Noncoding RNAs and MicroRNAs.长链非编码RNA和微小RNA对胃癌生物学行为相关基因的转录后调控
J Cancer. 2017 Nov 12;8(19):4141-4154. doi: 10.7150/jca.22076. eCollection 2017.
2
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions.DIANA-TarBase v8:一个长达十年的实验支持的 miRNA-基因相互作用集合。
Nucleic Acids Res. 2018 Jan 4;46(D1):D239-D245. doi: 10.1093/nar/gkx1141.
3
Functional polymorphisms in the promoter region of miR-17-92 cluster are associated with a decreased risk of colorectal cancer.
非编码 RNA 作为生物标志物及其在胃癌发病机制中的作用——叙述性综述。
Int J Mol Sci. 2024 May 9;25(10):5144. doi: 10.3390/ijms25105144.
4
Pan-cancer characterization of cell-free immune-related miRNA identified as a robust biomarker for cancer diagnosis.多癌种细胞游离免疫相关 miRNA 特征分析,鉴定为癌症诊断的稳健生物标志物。
Mol Cancer. 2024 Feb 12;23(1):31. doi: 10.1186/s12943-023-01915-7.
5
Investigating the expression level of miR-17-3p, miR-101-3p, miR-335-3p, and miR-296-3p in the peripheral blood of patients with acute myocardial infarction.检测急性心肌梗死患者外周血中 miR-17-3p、miR-101-3p、miR-335-3p 和 miR-296-3p 的表达水平。
Mol Cell Biochem. 2024 Apr;479(4):859-868. doi: 10.1007/s11010-023-04766-4. Epub 2023 May 24.
6
Analysis of Differential Expression of microRNAs and Their Target Genes in Prostate Cancer: A Bioinformatics Study on Microarray Gene Expression Data.前列腺癌中微小RNA及其靶基因的差异表达分析:基于基因芯片表达数据的生物信息学研究
Int J Mol Cell Med. 2019 Spring;8(2):103-114. doi: 10.22088/IJMCM.BUMS.8.2.103. Epub 2019 Oct 29.
7
Emerging Role of Circulating Tumor Cells in Gastric Cancer.循环肿瘤细胞在胃癌中的新兴作用
Cancers (Basel). 2020 Mar 15;12(3):695. doi: 10.3390/cancers12030695.
8
Candidate lncRNA-microRNA-mRNA networks in predicting non-small cell lung cancer and related prognosis analysis.预测非小细胞肺癌及相关预后分析的候选 lncRNA-miRNA-mRNA 网络。
J Cancer Res Clin Oncol. 2020 Apr;146(4):883-896. doi: 10.1007/s00432-020-03161-6. Epub 2020 Mar 2.
9
Cell-free miR-17-5p as a diagnostic biomarker for gastric cancer inhibits dendritic cell maturation.无细胞miR-17-5p作为胃癌的诊断生物标志物可抑制树突状细胞成熟。
Onco Targets Ther. 2019 Apr 9;12:2661-2675. doi: 10.2147/OTT.S197682. eCollection 2019.
miR-17-92簇启动子区域的功能多态性与结直肠癌风险降低相关。
Oncotarget. 2017 Jul 31;8(47):82531-82540. doi: 10.18632/oncotarget.19753. eCollection 2017 Oct 10.
4
LinkedOmics: analyzing multi-omics data within and across 32 cancer types.LinkedOmics:在 32 种癌症类型内和类型间分析多组学数据。
Nucleic Acids Res. 2018 Jan 4;46(D1):D956-D963. doi: 10.1093/nar/gkx1090.
5
miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions.miRTarBase 更新 2018:一个经过实验验证的 microRNA-靶标相互作用的资源库。
Nucleic Acids Res. 2018 Jan 4;46(D1):D296-D302. doi: 10.1093/nar/gkx1067.
6
Down-regulation of traditional oncomiRs in plasma of breast cancer patients.乳腺癌患者血浆中传统致癌miRNA的下调。
Oncotarget. 2017 Aug 24;8(44):77369-77384. doi: 10.18632/oncotarget.20484. eCollection 2017 Sep 29.
7
Diagnostic, Predictive, Prognostic, and Therapeutic Molecular Biomarkers in Third Millennium: A Breakthrough in Gastric Cancer.第三千纪的诊断、预测、预后和治疗性分子生物标志物:胃癌的突破。
Biomed Res Int. 2017;2017:7869802. doi: 10.1155/2017/7869802. Epub 2017 Sep 28.
8
OncomiR-17-5p: alarm signal in cancer?致癌miR-17-5p:癌症中的警报信号?
Oncotarget. 2017 Jul 18;8(41):71206-71222. doi: 10.18632/oncotarget.19331. eCollection 2017 Sep 19.
9
Differential expression of exosomal miRNAs between breast cancer patients with and without recurrence.有复发和无复发乳腺癌患者之间外泌体微小RNA的差异表达
Oncotarget. 2017 Jul 22;8(41):69934-69944. doi: 10.18632/oncotarget.19482. eCollection 2017 Sep 19.
10
MiR-17-5p enhances pancreatic cancer proliferation by altering cell cycle profiles via disruption of RBL2/E2F4-repressing complexes.miR-17-5p 通过破坏 RBL2/E2F4 抑制复合物改变细胞周期谱来增强胰腺癌增殖。
Cancer Lett. 2018 Jan 1;412:59-68. doi: 10.1016/j.canlet.2017.09.044. Epub 2017 Oct 4.