Department of Chemical Sciences, University of Limerick, Limerick, V94 T9PX, Ireland.
Bernal Institute, University of Limerick, Limerick, V94 T9PX, Ireland.
Sci Rep. 2018 Sep 6;8(1):13327. doi: 10.1038/s41598-018-31724-8.
Aldehyde dehydrogenases (ALDH) form a superfamily of dimeric or tetrameric enzymes that catalyze the oxidation of a broad range of aldehydes into their corresponding carboxylic acids with the concomitant reduction of the cofactor NAD(P) into NAD(P)H. Despite their varied polypeptide chain length and oligomerisation states, ALDHs possess a conserved architecture of three domains: the catalytic domain, NAD(P) binding domain, and the oligomerization domain. Here, we describe the structure and function of the ALDH from Thermus thermophilus (ALDH) which exhibits non-canonical features of both dimeric and tetrameric ALDH and a previously uncharacterized C-terminal arm extension forming novel interactions with the N-terminus in the quaternary structure. This unusual tail also interacts closely with the substrate entry tunnel in each monomer providing further mechanistic detail for the recent discovery of tail-mediated activity regulation in ALDH. However, due to the novel distal extension of the tail of ALDH and stabilizing termini-interactions, the current model of tail-mediated substrate access is not apparent in ALDH. The discovery of such a long tail in a deeply and early branching phylum such as Deinococcus-Thermus indicates that ALDH may be an ancestral or primordial metabolic model of study. This structure provides invaluable evidence of how metabolic regulation has evolved and provides a link to early enzyme regulatory adaptations.
醛脱氢酶(ALDH)形成一个二聚体或四聚体酶的超家族,催化广泛范围的醛氧化成其相应的羧酸,同时将辅因子 NAD(P)还原成 NAD(P)H。尽管它们的多肽链长度和聚合状态不同,但 ALDH 具有三个结构域的保守结构:催化结构域、NAD(P)结合结构域和聚合结构域。在这里,我们描述了来自 Thermus thermophilus 的 ALDH 的结构和功能(ALDH),它表现出二聚体和四聚体 ALDH 的非典型特征,以及以前未表征的 C 末端臂延伸,与四级结构中的 N 末端形成新的相互作用。这个不寻常的尾巴还与每个单体中的底物进入隧道密切相互作用,为最近在 ALDH 中发现的尾巴介导的活性调节提供了进一步的机制细节。然而,由于 ALDH 尾巴的新颖远端延伸和稳定的末端相互作用,目前关于尾巴介导的底物进入的模型在 ALDH 中并不明显。在像 Deinococcus-Thermus 这样深而早期分支的门中发现这样一个长尾巴表明,ALDH 可能是一个古老或原始的代谢研究模型。该结构提供了关于代谢调节如何进化的宝贵证据,并提供了与早期酶调节适应的联系。