Walsh Emily A, Kirkpatrick John B, Pockalny Robert, Sauvage Justine, Spivack Arthur J, Murray Richard W, Sogin Mitchell L, D'Hondt Steven
Graduate School of Oceanography, University of Rhode Island, Narragansett Bay Campus, Narragansett, Rhode Island, USA.
Department of Earth and Environment, Boston University, Boston, Massachusetts, USA.
Appl Environ Microbiol. 2016 Jul 29;82(16):4994-9. doi: 10.1128/AEM.00809-16. Print 2016 Aug 15.
Subseafloor sediment hosts a large, taxonomically rich, and metabolically diverse microbial ecosystem. However, the factors that control microbial diversity in subseafloor sediment have rarely been explored. Here, we show that bacterial richness varies with organic degradation rate and sediment age. At three open-ocean sites (in the Bering Sea and equatorial Pacific) and one continental margin site (Indian Ocean), richness decreases exponentially with increasing sediment depth. The rate of decrease in richness with increasing depth varies from site to site. The vertical succession of predominant terminal electron acceptors correlates with abundance-weighted community composition but does not drive the vertical decrease in richness. Vertical patterns of richness at the open-ocean sites closely match organic degradation rates; both properties are highest near the seafloor and decline together as sediment depth increases. This relationship suggests that (i) total catabolic activity and/or electron donor diversity exerts a primary influence on bacterial richness in marine sediment and (ii) many bacterial taxa that are poorly adapted for subseafloor sedimentary conditions are degraded in the geologically young sediment, where respiration rates are high. Richness consistently takes a few hundred thousand years to decline from near-seafloor values to much lower values in deep anoxic subseafloor sediment, regardless of sedimentation rate, predominant terminal electron acceptor, or oceanographic context.
Subseafloor sediment provides a wonderful opportunity to investigate the drivers of microbial diversity in communities that may have been isolated for millions of years. Our paper shows the impact of in situ conditions on bacterial community structure in subseafloor sediment. Specifically, it shows that bacterial richness in subseafloor sediment declines exponentially with sediment age, and in parallel with organic-fueled oxidation rate. This result suggests that subseafloor diversity ultimately depends on electron donor diversity and/or total community respiration. This work studied how and why biological richness changes over time in the extraordinary ecosystem of subseafloor sediment.
海底以下沉积物中存在着一个庞大、分类丰富且代谢多样的微生物生态系统。然而,控制海底以下沉积物中微生物多样性的因素却鲜有研究。在此,我们表明细菌丰富度随有机物质降解速率和沉积物年龄而变化。在三个大洋站点(白令海和赤道太平洋)和一个大陆边缘站点(印度洋),丰富度随沉积物深度增加呈指数下降。丰富度随深度增加的下降速率因站点而异。主要末端电子受体的垂直演替与丰度加权群落组成相关,但并非驱动丰富度垂直下降的原因。大洋站点丰富度的垂直模式与有机物质降解速率密切匹配;这两个属性在海底附近最高,并随着沉积物深度增加而共同下降。这种关系表明:(i)总分解代谢活性和/或电子供体多样性对海洋沉积物中的细菌丰富度起主要影响;(ii)许多不太适应海底以下沉积条件的细菌类群在地质年代较年轻、呼吸速率较高的沉积物中被降解。无论沉积速率、主要末端电子受体或海洋学背景如何,丰富度从海底附近值下降到深海缺氧海底以下沉积物中低得多的值通常需要几十万年。
海底以下沉积物为研究可能已隔离数百万年的群落中微生物多样性驱动因素提供了绝佳机会。我们的论文展示了原位条件对海底以下沉积物中细菌群落结构的影响。具体而言,它表明海底以下沉积物中的细菌丰富度随沉积物年龄呈指数下降,并与有机燃料氧化速率平行。这一结果表明海底以下的多样性最终取决于电子供体多样性和/或总群落呼吸作用。这项工作研究了在海底以下沉积物这一特殊生态系统中生物丰富度如何以及为何随时间变化。