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新种滨海芽球菌,从潮滩沉积物中分离得到。

Blastococcus litoris sp. nov., isolated from sea-tidal flat sediment.

作者信息

Lee Dong Wan, Lee Hanbyul, Kwon Bong-Oh, Khim Jong Seong, Yim Un Hyuk, Kim Beom Seok, Kim Jae-Jin

机构信息

1​Division of Environmental Science & Ecological Engineering, College of Life Science & Biotechnology, Korea University, Seoul 02841, Republic of Korea.

2​School of Earth and Environmental Science & Research Institute of Oceanography, Seoul National University, Seoul 08826, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2018 Nov;68(11):3435-3440. doi: 10.1099/ijsem.0.003004. Epub 2018 Sep 14.

Abstract

A novel Gram-strain-positive, non-spore-forming bacterial strain, designated GP-S2-8, was isolated from a sea-tidal flat sediment sample from Gopado, Republic of Korea. Cells were aerobic, catalase-negative, oxidase-positive, non-motile and cocci, occurring singly, in pairs or in tetrads, and often tending to form aggregates. The strain grew at 4-45 °C (optimum, 28-37 °C), at pH 4.0-11.0 (pH 7.0-9.0) and in the presence of 0-11 % (w/v) NaCl (0-3 %). Phylogenetic analyses based on 16S rRNA gene sequences represented that the isolate belongs to the genus Blastococcus. The diagnostic diamino acid in the cell-wall peptidoglycan was meso-diaminopimelic acid. Whole-cell sugar analysis of strain GP-S2-8 revealed rhamnose, glucose and mannose as characteristic sugars. The predominant respiratory quinone was MK-9(H4) and the major fatty acids were iso-C16 : 0, iso-C16 : 1 H, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), iso-C15 : 0 and iso-C14 : 0. The polar lipid profile included diphosphadidylglycerol, phosphatidylethanolamine, phosphatidylcholine, phosphatidylinositol, one unidentified glycophospholipid, two unidentified phospholipids and five unidentified lipids. The DNA G+C content was 74.2 mol%. DNA-DNA relatedness values between strain GP-S2-8 and type strains of the genus Blastococcus ranged from 14.6 to 48.6 %. On the basis of the phenotypic differences and DNA-DNA relatedness data, the isolate represents a new species of the genus Blastococcus, for which the name Blastococcuslitoris sp. nov. is proposed. The type strain is GP-S2-8 (=KCCM 43275=JCM 32354=DSM 106127=KCTC 49078).

摘要

从韩国戈帕多的潮滩沉积物样本中分离出一株新型革兰氏阳性、无芽孢形成的细菌菌株,命名为GP-S2-8。细胞为需氧型,过氧化氢酶阴性,氧化酶阳性,不运动,呈球菌状,单个、成对或四联排列,且常倾向于形成聚集体。该菌株在4-45 °C(最适温度为28-37 °C)、pH 4.0-11.0(pH 7.0-9.0)以及0-11 %(w/v)NaCl(0-3 %)存在的条件下生长。基于16S rRNA基因序列的系统发育分析表明,该分离株属于芽球菌属。细胞壁肽聚糖中的诊断性二氨基酸为内消旋二氨基庚二酸。对菌株GP-S2-8的全细胞糖分析显示,鼠李糖、葡萄糖和甘露糖为特征性糖类。主要呼吸醌为MK-9(H4),主要脂肪酸为异-C16 : 0、异-C16 : 1 H、总和特征3(C16 : 1ω7c和/或C16 : 1ω6c)、异-C15 : 0和异-C14 : 0。极性脂质谱包括二磷脂酰甘油、磷脂酰乙醇胺、磷脂酰胆碱、磷脂酰肌醇、一种未鉴定的糖磷脂、两种未鉴定的磷脂和五种未鉴定的脂质。DNA G+C含量为74.2 mol%。菌株GP-S2-8与芽球菌属模式菌株之间的DNA-DNA相关性值在14.6%至48.6 %之间。基于表型差异和DNA-DNA相关性数据,该分离株代表芽球菌属的一个新物种,为此提出芽球菌新种Blastococcuslitoris sp. nov.。模式菌株为GP-S2-8(=KCCM 43275=JCM 32354=DSM 106127=KCTC 49078)。

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