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A genomics-led approach to deciphering the mechanism of thiotetronate antibiotic biosynthesis.一种以基因组学为主导的方法来破译硫代特曲霉素抗生素生物合成的机制。
Chem Sci. 2016 Jan 1;7(1):376-385. doi: 10.1039/c5sc03059e. Epub 2015 Oct 8.
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Nature's combinatorial biosynthesis and recently engineered production of nucleoside antibiotics in Streptomyces.链霉菌中核苷类抗生素的自然组合生物合成及近期的工程化生产
World J Microbiol Biotechnol. 2017 Apr;33(4):66. doi: 10.1007/s11274-017-2233-6. Epub 2017 Mar 4.
4
Biosynthesis of 2'-Chloropentostatin and 2'-Amino-2'-Deoxyadenosine Highlights a Single Gene Cluster Responsible for Two Independent Pathways in sp. Strain ATCC 39365.2'-氯喷司他丁和2'-氨基-2'-脱氧腺苷的生物合成揭示了一个负责链霉菌属菌株ATCC 39365中两条独立途径的单一基因簇。
Appl Environ Microbiol. 2017 May 1;83(10). doi: 10.1128/AEM.00078-17. Print 2017 May 15.
5
An Unusual Protector-Protégé Strategy for the Biosynthesis of Purine Nucleoside Antibiotics.一种用于嘌呤核苷抗生素生物合成的非寻常保护-被保护策略。
Cell Chem Biol. 2017 Feb 16;24(2):171-181. doi: 10.1016/j.chembiol.2016.12.012. Epub 2017 Jan 19.
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Metabolism, Biochemical Actions, and Chemical Synthesis of Anticancer Nucleosides, Nucleotides, and Base Analogs.抗癌核苷、核苷酸及碱基类似物的代谢、生化作用和化学合成
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8
Five-Membered Cyclitol Phosphate Formation by a myo-Inositol Phosphate Synthase Orthologue in the Biosynthesis of the Carbocyclic Nucleoside Antibiotic Aristeromycin.在碳环核苷抗生素阿瑞霉素生物合成中,肌醇磷酸合酶同源物催化形成五元环糖醇磷酸酯。
Chembiochem. 2016 Nov 17;17(22):2143-2148. doi: 10.1002/cbic.201600348. Epub 2016 Sep 30.
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Cell Chem Biol. 2016 Aug 18;23(8):935-44. doi: 10.1016/j.chembiol.2016.07.011.
10
Guanine nucleotide binding to the Bateman domain mediates the allosteric inhibition of eukaryotic IMP dehydrogenases.鸟嘌呤核苷酸与贝特曼结构域的结合介导了对真核肌苷酸脱氢酶的变构抑制作用。
Nat Commun. 2015 Nov 12;6:8923. doi: 10.1038/ncomms9923.

放线菌中嘌呤核苷抗生素阿利斯特霉素和钴霉素的协调生物合成。

Coordinated Biosynthesis of the Purine Nucleoside Antibiotics Aristeromycin and Coformycin in Actinomycetes.

机构信息

Key Laboratory of Combinatorial Biosynthesis and Drug Discovery, Ministry of Education, and School of Pharmaceutical Sciences, Wuhan University, Wuhan, China.

State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.

出版信息

Appl Environ Microbiol. 2018 Oct 30;84(22). doi: 10.1128/AEM.01860-18. Print 2018 Nov 15.

DOI:10.1128/AEM.01860-18
PMID:30217843
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6210108/
Abstract

Purine nucleoside antibiotic pairs, concomitantly produced by a single strain, are an important group of microbial natural products. Here, we report a target-directed genome mining approach to elucidate the biosynthesis of the purine nucleoside antibiotic pair aristeromycin (ARM) and coformycin (COF) in DSM 45626 (a new producer for ARM and COF) and NBRC 13005 (a new COF producer). We also provide biochemical data that MacI and MacT function as unusual phosphorylases, catalyzing an irreversible reaction for the tailoring assembly of neplanocin A (NEP-A) and ARM. Moreover, we demonstrate that MacQ is shown to be an adenosine-specific deaminase, likely relieving the potential "excess adenosine" for producing cells. Finally, we report that MacR, an annotated IMP dehydrogenase, is actually an NADPH-dependent GMP reductase, which potentially plays a salvage role for the efficient supply of the precursor pool. Hence, these findings illustrate a fine-tuned pathway for the biosynthesis of ARM and also open the way for the rational search for purine antibiotic pairs. ARM and COF are well known for their prominent biological activities and unusual chemical structures; however, the logic of their biosynthesis has long been poorly understood. Actually, the new insights into the ARM and COF pathway will not only enrich the biochemical repertoire for interesting enzymatic reactions but may also lay a solid foundation for the combinatorial biosynthesis of this group of antibiotics via a target-directed genome mining strategy.

摘要

嘌呤核苷抗生素对,由单一菌株同时产生,是微生物天然产物的一个重要类别。在这里,我们报告了一种基于靶标的基因组挖掘方法,以阐明嘌呤核苷抗生素对阿利斯特霉素(ARM)和考福霉素(COF)在 DSM 45626(ARM 和 COF 的新产生菌)和 NBRC 13005(COF 的新产生菌)中的生物合成。我们还提供了生化数据,表明 MacI 和 MacT 作为不寻常的磷酸化酶发挥作用,催化 neplanocin A(NEP-A)和 ARM 的后修饰组装的不可逆反应。此外,我们证明 MacQ 是一种腺苷特异性脱氨酶,可能为产生细胞释放潜在的“多余腺苷”。最后,我们报告指出,被注释为 IMP 脱氢酶的 MacR 实际上是一种 NADPH 依赖性 GMP 还原酶,它可能为前体池的有效供应发挥挽救作用。因此,这些发现说明了 ARM 生物合成的精细调控途径,也为合理寻找嘌呤抗生素对开辟了道路。ARM 和 COF 以其显著的生物学活性和不寻常的化学结构而闻名;然而,其生物合成的逻辑长期以来一直知之甚少。实际上,对 ARM 和 COF 途径的新见解不仅丰富了有趣酶反应的生化谱,而且还可能通过基于靶标的基因组挖掘策略为这组抗生素的组合生物合成奠定坚实的基础。