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正向遗传学方法揭示,编码bHLH转录因子的基因中的一个突变是大麦根无毛表型的最佳候选因素。

Forward Genetics Approach Reveals a Mutation in bHLH Transcription Factor-Encoding Gene as the Best Candidate for the Root Hairless Phenotype in Barley.

作者信息

Gajewska Patrycja, Janiak Agnieszka, Kwasniewski Miroslaw, Kędziorski Piotr, Szarejko Iwona

机构信息

Department of Genetics, University of Silesia in Katowice, Katowice, Poland.

Centre for Bioinformatics and Data Analysis, Medical University of Bialystok, Bialystok, Poland.

出版信息

Front Plant Sci. 2018 Sep 3;9:1229. doi: 10.3389/fpls.2018.01229. eCollection 2018.

Abstract

Root hairs are the part of root architecture contributing significantly to the root surface area. Their role is particularly substantial in maintaining plant growth under stress conditions, however, knowledge on mechanism of root hair differentiation is still limited for majority of crop species, including barley. Here, we report the results of a map-based identification of a candidate gene responsible for the lack of root epidermal cell differentiation, which results in the lack of root hairs in barley. The analysis was based on the root hairless barley mutant , obtained after chemical mutagenesis of spring cultivar 'Karat'. The gene was located in chromosome 7HS in our previous studies. Fine mapping allowed to narrow the interval encompassing gene to 3.7 cM, which on physical barley map spans a region of 577 kb. Five high confidence genes are located within this region and their sequencing resulted in the identification of A>T mutation in one candidate, HORVU7Hr1G030250 (MLOC_38567), differing the mutant from its parent variety. The mutation, located in the 3' splice-junction site, caused the retention of the last intron, 98 bp long, in mRNA of allele. This resulted in the frameshift, the synthesis of 71 abnormal amino acids and introduction of premature STOP codon in mRNA. The mutation was present in the recombinants from the mapping population (F × 'Morex') that lacked root hairs. The candidate gene encodes a bHLH transcription factor with LRL domain and may be involved in early stages of root hair cell development. We discuss the possible involvement of HORVU7Hr1G030250 in this process, as the best candidate responsible for early stages of rhizodermis differentiation in barley.

摘要

根毛是根系结构的一部分,对根表面积有显著贡献。它们在胁迫条件下维持植物生长方面的作用尤为重要,然而,对于包括大麦在内的大多数作物品种,根毛分化机制的了解仍然有限。在这里,我们报告了基于图谱鉴定负责大麦根表皮细胞分化缺失从而导致根毛缺失的候选基因的结果。该分析基于对春性品种“Karat”进行化学诱变后获得的无根毛大麦突变体。在我们之前的研究中,该基因位于7HS染色体上。精细定位将包含该基因的区间缩小到3.7厘摩,在大麦物理图谱上该区间跨度为577千碱基对。该区域内有五个高可信度基因,对它们进行测序后在一个候选基因HORVU7Hr1G030250(MLOC_38567)中鉴定出A>T突变,这使得突变体与其亲本品种有所不同。该突变位于3'剪接连接位点,导致98个碱基对长的最后一个内含子保留在等位基因的mRNA中。这导致了移码,合成了71个异常氨基酸,并在mRNA中引入了提前终止密码子。该突变存在于缺乏根毛的定位群体(FדMorex”)的重组体中。该候选基因编码一个具有LRL结构域的bHLH转录因子,可能参与根毛细胞发育的早期阶段。我们讨论了HORVU7Hr1G030250作为大麦根表皮分化早期阶段最有可能的候选基因在这一过程中的可能作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d5b2/6129617/a603303ccc14/fpls-09-01229-g001.jpg

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