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基于全外显子组测序的大麦根毛发育相关新基因的鉴定

Whole Exome Sequencing-Based Identification of a Novel Gene Involved in Root Hair Development in Barley ( L.).

机构信息

Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia, 40-032 Katowice, Poland.

Centre for Bioinformatics and Data Analysis, Medical University of Bialystok, 15-089 Bialystok, Poland.

出版信息

Int J Mol Sci. 2021 Dec 14;22(24):13411. doi: 10.3390/ijms222413411.

Abstract

Root hairs play a crucial role in anchoring plants in soil, interaction with microorganisms and nutrient uptake from the rhizosphere. In contrast to Arabidopsis, there is a limited knowledge of root hair morphogenesis in monocots, including barley ( L.). We have isolated barley mutant with an abnormal root hair phenotype after chemical mutagenesis of spring cultivar 'Sebastian'. The development of root hairs was initiated in the mutant but inhibited at the very early stage of tip growth. The length of root hairs reached only 3% of the length of parent cultivar. Using a whole exome sequencing (WES) approach, we identified G1674A mutation in the gene, located on chromosome 1HL and encoding a cellulose synthase-like C1 protein (HvCSLC1) that might be involved in the xyloglucan (XyG) synthesis in root hairs. The identified mutation led to the retention of the second intron and premature termination of the HvCSLC1 protein. The mutation co-segregated with the abnormal root hair phenotype in the F progeny of mutant and its wild-type parent. Additionally, different substitutions in were found in four other allelic mutants with the same root hair phenotype. Here, we discuss the putative role of HvCSLC1 protein in root hair tube elongation in barley.

摘要

根毛在植物扎根土壤、与微生物相互作用以及从根际吸收养分方面起着至关重要的作用。与拟南芥相比,单子叶植物根毛形态发生的知识有限,包括大麦(L.)。我们通过对春大麦品种“塞巴斯蒂安”进行化学诱变,分离出了根毛形态异常的大麦突变体 。突变体中根毛的发育已经启动,但在尖端生长的早期阶段被抑制。根毛的长度仅达到亲本品种的 3%。通过全外显子组测序(WES)方法,我们在 1HL 染色体上定位到 基因的 G1674A 突变,该基因编码一个纤维素合酶类似 C1 蛋白(HvCSLC1),可能参与根毛中的木葡聚糖(XyG)合成。鉴定出的突变导致第二个内含子的保留和 HvCSLC1 蛋白的过早终止。该突变与 突变体及其野生型亲本的 F 代后代中异常根毛表型共分离。此外,在具有相同根毛表型的另外四个等位突变体中发现了 中的不同取代。在这里,我们讨论了 HvCSLC1 蛋白在大麦根毛管伸长中的可能作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e63c/8709170/ad06d28eefe8/ijms-22-13411-g001.jpg

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