Department of Biosciences, University of Milan, Via Celoria 26, 20133, Milan, Italy.
A.V. Shubnikov Institute of Crystallography of Federal Scientific Research Centre "Crystallography and Photonics" of Russian Academy of Sciences, Leninsky prospect 59, 119333, Moscow, Russia.
Protein Sci. 2019 Jan;28(1):150-166. doi: 10.1002/pro.3512. Epub 2018 Oct 31.
Human MICAL1 is a member of a recently discovered family of multidomain proteins that couple a FAD-containing monooxygenase-like domain to typical protein interaction domains. Growing evidence implicates the NADPH oxidase reaction catalyzed by the flavoprotein domain in generation of hydrogen peroxide as a second messenger in an increasing number of cell types and as a specific modulator of actin filaments stability. Several proteins of the Rab families of small GTPases are emerging as regulators of MICAL activity by binding to its C-terminal helical domain presumably shifting the equilibrium from the free - auto-inhibited - conformation to the active one. We here extend the characterization of the MICAL1-Rab8 interaction and show that indeed Rab8, in the active GTP-bound state, stabilizes the active MICAL1 conformation causing a specific four-fold increase of k of the NADPH oxidase reaction. Kinetic data and small-angle X-ray scattering (SAXS) measurements support the formation of a 1:1 complex between full-length MICAL1 and Rab8 with an apparent dissociation constant of approximately 8 μM. This finding supports the hypothesis that Rab8 is a physiological regulator of MICAL1 activity and shows how the protein region preceding the C-terminal Rab-binding domain may mask one of the Rab-binding sites detected with the isolated C-terminal fragment. SAXS-based modeling allowed us to propose the first model of the free full-length MICAL1, which is consistent with an auto-inhibited conformation in which the C-terminal region prevents catalysis by interfering with the conformational changes that are predicted to occur during the catalytic cycle.
人类 MICAL1 是一个最近发现的多结构域蛋白家族的成员,该家族将含有 FAD 的单加氧酶样结构域与典型的蛋白相互作用结构域偶联在一起。越来越多的证据表明,黄素蛋白结构域催化的 NADPH 氧化酶反应产生过氧化氢作为第二信使,在越来越多的细胞类型中作为肌动蛋白丝稳定性的特定调节剂。越来越多的小 GTP 酶 Rab 家族蛋白被认为是通过结合其 C 末端螺旋结构域来调节 MICAL 活性的调节剂,可能将平衡从自由 - 自动抑制 - 构象转变为活性构象。我们在此扩展了 MICAL1-Rab8 相互作用的特征描述,并表明 Rab8 确实在活性 GTP 结合状态下稳定了活性 MICAL1 构象,导致 NADPH 氧化酶反应的 k 值特异性增加了四倍。动力学数据和小角 X 射线散射 (SAXS) 测量结果支持全长 MICAL1 和 Rab8 之间形成 1:1 复合物,其表观解离常数约为 8 μM。这一发现支持了 Rab8 是 MICAL1 活性的生理调节剂的假设,并表明 C 末端 Rab 结合结构域之前的蛋白区域如何掩盖了与分离的 C 末端片段检测到的一个 Rab 结合位点。基于 SAXS 的建模使我们能够提出第一个自由全长 MICAL1 的模型,该模型与自动抑制构象一致,其中 C 末端区域通过干扰预测在催化循环中发生的构象变化来阻止催化。