Institute of Chemistry , The Hebrew University of Jerusalem , Jerusalem 9190401 , Israel.
Center for Nanoscience and Nanotechnology , The Hebrew University of Jerusalem , Jerusalem 9190401 , Israel.
Biochemistry. 2018 Oct 30;57(43):6153-6165. doi: 10.1021/acs.biochem.8b00560. Epub 2018 Oct 9.
Single and double tubulin rings were studied under a range of conditions and during microtubule (MT) assembly and disassembly. Here, tubulin was purified from porcine brain and used without any further modifications or additives that promote ring assembly. The structure of single GDP-rich tubulin rings was determined by cryo-transmission electron microscopy and synchrotron solution X-ray scattering. The scattering curves were fitted to atomic models, using our state-of-the-art analysis software, D+ . We found that there is a critical concentration for ring formation, which increased with GTP concentration with temperature. MT assembly or disassembly, induced by changes in temperature, was analyzed by time-resolved small-angle X-ray scattering. During MT assembly, the fraction of rings and unassembled dimers simultaneously decreased. During MT disassembly, the mass fraction of dimers increased. The increase in the concentration of rings was delayed until the fraction of dimers was sufficiently high. We verified that pure dimers, eluted via size-exclusion chromatography, could also form rings. Interestingly, X-ray radiation triggered tubulin ring disassembly. The concentration of disassembled rings versus exposure time followed a first-order kinetics. The disassembly rate constant and initial concentration were determined. X-ray radiation-triggered disassembly was used to determine the concentration of rings. We confirmed that following a temperature jump, the mass fraction of rings decreased and then stabilized at a constant value during the first stage of the MT assembly kinetics. This study sheds light on the most basic assembly and disassembly conditions for in vitro single GDP-rich tubulin rings and their relation to MT kinetics.
我们在一系列条件下,以及在微管(MT)组装和拆卸过程中,研究了单管蛋白和双管蛋白环。在此,我们从猪脑中纯化了管蛋白,并且在没有任何促进环组装的进一步修饰或添加剂的情况下使用它。通过低温透射电子显微镜和同步辐射溶液 X 射线散射,确定了单 GDP 丰富的管蛋白环的结构。散射曲线使用我们最先进的分析软件 D+拟合原子模型。我们发现存在一个环形成的临界浓度,该浓度随 GTP 浓度和温度的升高而增加。通过温度变化诱导 MT 组装或拆卸,通过时间分辨小角 X 射线散射进行分析。在 MT 组装过程中,环和未组装的二聚体的分数同时减少。在 MT 拆卸过程中,二聚体的质量分数增加。环的浓度增加延迟到二聚体的分数足够高为止。我们验证了通过尺寸排阻色谱法洗脱的纯二聚体也可以形成环。有趣的是,X 射线辐射引发了管蛋白环的拆卸。与暴露时间相比,拆卸的环的浓度遵循一级动力学。确定了拆卸速率常数和初始浓度。X 射线辐射触发的拆卸用于确定环的浓度。我们确认,在温度跃变之后,环的质量分数降低,然后在 MT 组装动力学的第一阶段稳定在恒定值。这项研究阐明了体外单 GDP 丰富的管蛋白环的最基本组装和拆卸条件及其与 MT 动力学的关系。