Department of Theoretical and Computational Biophysics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
Elife. 2018 Apr 13;7:e34353. doi: 10.7554/eLife.34353.
Microtubules (MTs) are key components of the cytoskeleton and play a central role in cell division and development. MT assembly is known to be associated with a structural change in [Formula: see text]-tubulin dimers from kinked to straight conformations. How GTP binding renders individual dimers polymerization-competent, however, is still unclear. Here, we have characterized the conformational dynamics and energetics of unassembled tubulin using atomistic molecular dynamics and free energy calculations. Contrary to existing allosteric and lattice models, we find that GTP-tubulin favors a broad range of almost isoenergetic curvatures, whereas GDP-tubulin has a much lower bending flexibility. Moreover, irrespective of the bound nucleotide and curvature, two conformational states exist differing in location of the anchor point connecting the monomers that affects tubulin bending, with one state being strongly favored in solution. Our findings suggest a new combined model in which MTs incorporate and stabilize flexible GTP-dimers with a specific anchor point state.
微管(MTs)是细胞骨架的关键组成部分,在细胞分裂和发育中起着核心作用。众所周知,MT 的组装与 [公式:见正文] -微管二聚体从扭曲到直构象的结构变化有关。然而,GTP 结合如何使单个二聚体具有聚合能力仍不清楚。在这里,我们使用原子分子动力学和自由能计算来描述未组装的微管的构象动力学和能量学。与现有的变构和晶格模型相反,我们发现 GTP-微管有利于广泛的几乎等能量曲率,而 GDP-微管的弯曲灵活性要低得多。此外,无论结合的核苷酸和曲率如何,都存在两种构象状态,其区别在于连接单体的锚定点的位置,这会影响微管的弯曲,其中一种状态在溶液中强烈占优。我们的研究结果表明了一种新的组合模型,其中 MT 包含并稳定具有特定锚定点状态的灵活 GTP-二聚体。