Department of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322.
Department of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322
Proc Natl Acad Sci U S A. 2018 Oct 30;115(44):11226-11231. doi: 10.1073/pnas.1809319115. Epub 2018 Sep 27.
Accurate translation of the genetic code is critical to ensure expression of proteins with correct amino acid sequences. Certain tRNAs can cause a shift out of frame (i.e., frameshifting) due to imbalances in tRNA concentrations, lack of tRNA modifications or insertions or deletions in tRNAs (called frameshift suppressors). Here, we determined the structural basis for how frameshift-suppressor tRNA (a derivative of tRNA) reprograms the mRNA frame to translate a 4-nt codon when bound to the bacterial ribosome. After decoding at the aminoacyl (A) site, the crystal structure of the anticodon stem-loop of tRNA bound in the peptidyl (P) site reveals ASL conformational changes that allow for recoding into the +1 mRNA frame. Furthermore, a crystal structure of full-length tRNA programmed in the P site shows extensive conformational rearrangements of the 30S head and body domains similar to what is observed in a translocation intermediate state containing elongation factor G (EF-G). The 30S movement positions tRNA toward the 30S exit (E) site disrupting key 16S rRNA-mRNA interactions that typically define the mRNA frame. In summary, this tRNA-induced 30S domain change in the absence of EF-G causes the ribosome to lose its grip on the mRNA and uncouples the canonical forward movement of the tRNAs during elongation.
准确翻译遗传密码对于确保蛋白质表达具有正确的氨基酸序列至关重要。某些 tRNA 可能会由于 tRNA 浓度失衡、tRNA 修饰缺乏或 tRNA 插入或缺失(称为移码抑制物)而导致移码(即移框)。在这里,我们确定了移码抑制物 tRNA(tRNA 的衍生物)如何重新编程 mRNA 框架以在与细菌核糖体结合时翻译 4 个核苷酸密码子的结构基础。在氨酰基(A)位点解码后,结合在肽酰基(P)位点的 tRNA 反密码子茎环的晶体结构揭示了 ASL 构象变化,从而允许重新编码到+1 mRNA 框架。此外,全长 tRNA 在 P 位点编程的晶体结构显示 30S 头部和主体结构域的广泛构象重排,类似于含有延伸因子 G(EF-G)的易位中间状态中观察到的构象重排。30S 的移动将 tRNA 定位到 30S 出口(E)位点,破坏了通常定义 mRNA 框架的关键 16S rRNA-mRNA 相互作用。总之,在没有 EF-G 的情况下,这种 tRNA 诱导的 30S 结构域变化导致核糖体失去对 mRNA 的控制,并在延伸过程中使 tRNA 的典型正向运动解耦。