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基于生物信息学分析鉴定 NCI-N87 胃癌细胞暴露于槲皮素后的作用靶点

Bioinformatics analysis to identify action targets in NCI-N87 gastric cancer cells exposed to quercetin.

机构信息

a Department of Medical Oncology, Jiangsu Cancer Hospital and Jiangsu Institute of Cancer Research and The Affiliated Cancer Hospital of Nanjing Medical University , Nanjing , Jiangsu , China.

b Jiangsu Collaborative Innovation Center of Traditional Chinese Medicine (TCM) Prevention and Treatment of Tumor , Nanjing University of Chinese Medicine , Nanjing , Jiangsu , China.

出版信息

Pharm Biol. 2018 Dec;56(1):393-398. doi: 10.1080/13880209.2018.1493610.

Abstract

CONTEXT

Quercetin exerts antiproliferative effects on gastric cancer. However, its mechanisms of action on gastric cancer have not been comprehensively revealed.

OBJECTIVE

We investigated the mechanisms of action of quercetin against gastric cancer cells.

MATERIALS AND METHODS

Human NCI-N87 gastric cancer cells were treated with 15 μM quercetin or dimethyl sulfoxide (as a control) for 48 h. DNA isolated from cells was sequenced on a HiSeq 2500, and the data were used to identify differentially expressed genes (DEGs) between groups. Then, enrichment analyses were performed for DEGs and a protein-protein interaction (PPI) network was constructed. Finally, the transcription factors (TFs)-DEGs regulatory network was visualized by Cytoscape software.

RESULTS

A total of 121 DEGs were identified in the quercetin group. In the PPI network, Fos proto-oncogene (FOS, degree = 12), aryl hydrocarbon receptor (AHR, degree = 12), Jun proto-oncogene (JUN, degree = 11), and cytochrome P450 family 1 subfamily A member 1 (CYP1A1, degree = 11) with higher degrees highly interconnected with other proteins. Of the 5 TF-DEGs, early growth response 1 (EGR1), FOS like 1 (FOSL1), FOS, and JUN were upregulated, while AHR was downregulated. Moreover, FOSL1, JUN, and Wnt family member 7B (WNT7B) were enriched in the Wnt signaling pathway.

DISCUSSION AND CONCLUSIONS

CYP1A1 highly interconnected with AHR in the PPI network. Therefore, FOS, AHR, JUN, CYP1A1, EGR1, FOSL1, and WNT7B might be targets of quercetin in gastric cancer.

摘要

背景

槲皮素对胃癌具有抗增殖作用。然而,其对胃癌的作用机制尚未得到全面揭示。

目的

研究槲皮素对胃癌细胞的作用机制。

材料和方法

用 15μM 槲皮素或二甲基亚砜(作为对照)处理人 NCI-N87 胃癌细胞 48h。从细胞中提取 DNA,在 HiSeq 2500 上进行测序,利用数据鉴定组间差异表达基因(DEGs)。然后,对 DEGs 进行富集分析,并构建蛋白质-蛋白质相互作用(PPI)网络。最后,使用 Cytoscape 软件可视化转录因子(TF)-DEGs 调控网络。

结果

在槲皮素组中鉴定出 121 个 DEGs。在 PPI 网络中,原癌基因 Fos(FOS,度=12)、芳香烃受体(AHR,度=12)、原癌基因 Jun(JUN,度=11)和细胞色素 P450 家族 1 亚家族 A 成员 1(CYP1A1,度=11)与其他蛋白质高度相互连接。在 5 个 TF-DEGs 中,早期生长反应 1(EGR1)、FOS 样 1(FOSL1)、FOS 和 JUN 上调,而 AHR 下调。此外,FOSL1、JUN 和 Wnt 家族成员 7B(WNT7B)在 Wnt 信号通路中富集。

讨论与结论

PPI 网络中 CYP1A1 与 AHR 高度相互连接。因此,FOS、AHR、JUN、CYP1A1、EGR1、FOSL1 和 WNT7B 可能是槲皮素在胃癌中的作用靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf1a/6171422/3f3c79529698/IPHB_A_1493610_F0001_B.jpg

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