Informatics Institute, Istanbul Technical University, 34469 Maslak, Istanbul, Turkey.
Phys Chem Chem Phys. 2018 Nov 7;20(41):26303-26314. doi: 10.1039/c8cp03798a. Epub 2018 Oct 4.
A new intermolecular interaction potential for the adenine dimer has been developed with the help of a combination of symmetry-adapted perturbation theory and density functional theory (DFT-SAPT). Supermolecular intermolecular interaction energy computations on hydrogen-bonded and stacked adenine dimers at B3LYP-D, MP2, SCS-MP2, SCS-MI-MP2 and CCSD(T) levels showed that DFT-SAPT is in a very good agreement with CCSD(T). The developed ab initio intermolecular potential has been used to predict the cluster structure of adenine dimers, trimers and tetramers. These global cluster optimizations reproduced adenine dimers reported in the literature and moreover new low-energy structures were also located. For trimers and tetramers, new hydrogen-bonded and stacked low-energy structures have also been found. The current findings suggest that the new ab initio potential can further be exploited to reveal the structure and energy of much larger supramolecular adenine clusters.
已借助于对称适应微扰理论和密度泛函理论(DFT-SAPT)的组合,为腺嘌呤二聚体开发了新的分子间相互作用势能。在 B3LYP-D、MP2、SCS-MP2、SCS-MI-MP2 和 CCSD(T) 水平上对氢键和堆积的腺嘌呤二聚体的超分子分子间相互作用能计算表明,DFT-SAPT 与 CCSD(T) 非常吻合。已开发的从头算分子间势能已用于预测腺嘌呤二聚体、三聚体和四聚体的团簇结构。这些全局团簇优化重现了文献中报道的腺嘌呤二聚体,并且还找到了新的低能结构。对于三聚体和四聚体,还发现了新的氢键和堆积的低能结构。目前的研究结果表明,新的从头算势能可以进一步用于揭示更大的超分子腺嘌呤簇的结构和能量。