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从沙漠土壤中分离出的黄色沙漠单胞菌属,新属,新种,以及新科——发光杆菌科的提议

Desertimonas flava gen. nov., sp. nov. isolated from a desert soil, and proposal of Ilumatobacteraceae fam. nov.

作者信息

Asem Mipeshwaree Devi, Shi Lei, Jiao Jian-Yu, Wang Dong, Han Ming-Xian, Dong Lei, Liu Feng, Salam Nimaichand, Li Wen-Jun

机构信息

1​State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, Sun Yat-Sen University, Guangzhou, 510275, PR China.

2​Division of Neurosurgical Intensive Care Unit, Department of Critical Care Medicine, The First Affiliated Hospital, Sun Yat-Sen University, Guangzhou, 510080, PR China.

出版信息

Int J Syst Evol Microbiol. 2018 Nov;68(11):3593-3599. doi: 10.1099/ijsem.0.003038. Epub 2018 Oct 4.

Abstract

A non-motile, coccobacilli-shaped and yellow-coloured bacterium, designated strain SYSU D60003, was isolated from a desert soil sample. Cells were Gram-stain-positive, catalase-negative and oxidase-positive. The whole cell hydrolysates contained ll-diaminopimelic acid as the diagnostic amino acid. The major fatty acids were C16 : 0, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) and iso-C16 : 0. The respiratory menaquinones were MK-9(H8), MK-9(H4) and MK-9(H6). The DNA G+C content was determined to be 70.2 % (genome). The polar lipids detected were diphosphatidylglycerol, an unidentified glycolipid and seven unidentified polar lipids. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain SYSU D60003 belonged to the order Acidimicrobiales (class Acidimicrobiia), but formed a clade closely linked to members of the genus Ilumatobacter. Data from a polyphasic taxonomy study suggested that the isolate represents a novel species of a novel genus in the order Acidimicrobiales, for which the name Desertimonas flava gen. nov., sp. nov. is proposed. The type strain of the proposed new taxon is SYSU D60003 (=KCTC 39917=NBRC 112924). Additionally, the new taxon along with the genus Ilumatobater (family unassigned) were distinctly separated from the related families Acidimicrobiaceae, Iamiaceae and 'Microtrichaceae' in the phylogenetic trees, besides presenting a unique 16S rRNA gene signature nucleotides. Therefore, we propose a new family Ilumatobacteraceae fam. nov. within the order Acidimicrobiales to accommodate members of these two genera.

摘要

从一份沙漠土壤样本中分离出一株无运动性、球杆菌状且呈黄色的细菌,命名为菌株SYSU D60003。细胞革兰氏染色呈阳性,过氧化氢酶阴性,氧化酶阳性。全细胞水解产物含有ll - 二氨基庚二酸作为诊断性氨基酸。主要脂肪酸为C16 : 0、特征性总和3(C16 : 1ω7c和/或C16 : 1ω6c)以及异C16 : 0。呼吸型甲基萘醌为MK - 9(H8)、MK - 9(H4)和MK - 9(H6)。经测定,DNA G + C含量为70.2%(基因组)。检测到的极性脂质有双磷脂酰甘油、一种未鉴定的糖脂和七种未鉴定的极性脂质。基于16S rRNA基因序列的系统发育分析表明,菌株SYSU D60003属于酸微菌目(酸微菌纲),但形成了一个与发光杆菌属成员紧密相连的进化枝。多相分类研究的数据表明,该分离株代表酸微菌目中一个新属的新物种,为此提出新属名沙漠单胞菌属(Desertimonas),新种名黄色沙漠单胞菌(Desertimonas flava)。提议的新分类单元的模式菌株为SYSU D60003(=KCTC 39917=NBRC 112924)。此外,除了呈现独特的16S rRNA基因特征核苷酸外,新分类单元与发光杆菌属(科未指定)在系统发育树中与相关的酸微菌科、伊米科和“微丝菌科”明显分开。因此,我们提议在酸微菌目中设立一个新科——发光杆菌科(Ilumatobacteraceae),以容纳这两个属的成员。

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