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为什么大型二十面体病毒需要支架蛋白。

Why large icosahedral viruses need scaffolding proteins.

机构信息

Department of Physics and Astronomy, University of California, Riverside, CA 92521;

Department of Pathogen Molecular Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London WC1E 7HT, United Kingdom.

出版信息

Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):10971-10976. doi: 10.1073/pnas.1807706115. Epub 2018 Oct 9.

Abstract

While small single-stranded viral shells encapsidate their genome spontaneously, many large viruses, such as the herpes simplex virus or infectious bursal disease virus (IBDV), typically require a template, consisting of either scaffolding proteins or an inner core. Despite the proliferation of large viruses in nature, the mechanisms by which hundreds or thousands of proteins assemble to form structures with icosahedral order (IO) is completely unknown. Using continuum elasticity theory, we study the growth of large viral shells (capsids) and show that a nonspecific template not only selects the radius of the capsid, but also leads to the error-free assembly of protein subunits into capsids with universal IO. We prove that as a spherical cap grows, there is a deep potential well at the locations of disclinations that later in the assembly process will become the vertices of an icosahedron. Furthermore, we introduce a minimal model and simulate the assembly of a viral shell around a template under nonequilibrium conditions and find a perfect match between the results of continuum elasticity theory and the numerical simulations. Besides explaining available experimental results, we provide a number of predictions. Implications for other problems in spherical crystals are also discussed.

摘要

虽然小的单链病毒壳体会自发地包裹它们的基因组,但许多大型病毒,如单纯疱疹病毒或传染性法氏囊病病毒(IBDV),通常需要一个模板,由支架蛋白或内部核心组成。尽管大型病毒在自然界中大量存在,但数百或数千个蛋白质组装成具有二十面体有序(IO)结构的机制仍然完全未知。我们使用连续弹性理论研究了大型病毒壳(衣壳)的生长,并表明非特异性模板不仅选择衣壳的半径,而且还导致蛋白质亚基错误地组装成具有通用 IO 的衣壳。我们证明,随着球形帽的生长,在位错的位置存在一个深的势能阱,这些位错后来在组装过程中会成为二十面体的顶点。此外,我们引入了一个最小模型,并在非平衡条件下模拟了一个模板周围的病毒壳的组装,发现连续弹性理论的结果与数值模拟之间存在完美匹配。除了解释现有的实验结果外,我们还提供了一些预测。还讨论了对其他球形晶体问题的影响。

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Why large icosahedral viruses need scaffolding proteins.为什么大型二十面体病毒需要支架蛋白。
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