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光谱分析(FT-IR、FT-Raman、NMR 和 UV-Vis)、自动氧化机制(H-BDE)和密度泛函理论/含时密度泛函理论(DFT/TD-DFT)及分子动力学研究 3-(4-氯苯基)-N,N-二甲基-3-吡啶-2-基丙-1-胺:一种潜在的 SSRI 药物。

Spectroscopic profiling (FT-IR, FT-Raman, NMR and UV-Vis), autoxidation mechanism (H-BDE) and molecular docking investigation of 3-(4-chlorophenyl)-N,N-dimethyl-3-pyridin-2-ylpropan-1-amine by DFT/TD-DFT and molecular dynamics: A potential SSRI drug.

机构信息

Department of Physics, Madras Christian College, Chennai, 600 059, Tamil Nadu, India.

Department of Physics, Arignar Anna Government Arts College, Cheyyar, 604 407, Tamil Nadu, India.

出版信息

Comput Biol Chem. 2018 Dec;77:131-145. doi: 10.1016/j.compbiolchem.2018.08.010. Epub 2018 Sep 3.

DOI:10.1016/j.compbiolchem.2018.08.010
PMID:30312906
Abstract

Spectroscopic profiling in terms of FT-IR, FT-Raman, UV-vis and NMR in addition to reactivity study by density functional theory (DFT) and molecular dynamics (MD) simulations of 3-(4-chlorophenyl)-N,N-dimethyl-3-pyridin-2-ylpropan-1-amine (CHClN) have been discussed. In order to assign principal vibrational numbers, the Potential energy distribution (PED) analysis has been executed. Frontier molecular orbitals (FMOs) analysis in addition to the stabilization energy and natural hybrid orbital analysis has been done. Local reactivity properties of this compound have been addressed through molecular electrostatic potential (MEP) and average local ionization energy (ALIE) surfaces. The bond dissociation energy for hydrogen abstraction (H-BDE) and chemical bonding analysis in terms of electron localization function gave details regarding the Pauli exchange repulsion effect in the electrons of the molecule. Molecular dynamics simulation has been performed in order to understand reactivity of title molecule with water. Molecular docking study was executed to evaluate the potential of the title molecule to bind with 5-HT1 A serotonin receptor and thus can be a lead compound for developing new SSRI (Selective serotonin reuptake inhibitor) drug. Aside from molecular docking, drug likeness parameters have been also considered and by QSAR modeling the comparison of physiochemical parameters of commercially available SSRI drugs and title molecule is carried out.

摘要

已经讨论了 3-(4-氯苯基)-N,N-二甲基-3-吡啶-2-基丙-1-胺(CHClN)的傅里叶变换红外(FT-IR)、傅里叶变换拉曼(FT-Raman)、紫外-可见(UV-vis)和 NMR 的光谱剖析以及通过密度泛函理论(DFT)和分子动力学(MD)模拟的反应性研究。为了分配主要振动数,进行了势能分布(PED)分析。进行了前沿分子轨道(FMO)分析以及稳定能和自然杂化轨道分析。通过分子静电势(MEP)和平均局域电离能(ALIE)表面研究了该化合物的局部反应性。通过氢抽象(H-BDE)的键离解能和电子定域函数的化学键分析,详细说明了分子中电子的泡利排斥效应。为了理解标题分子与水的反应性,进行了分子动力学模拟。执行分子对接研究以评估标题分子与 5-HT1A 血清素受体结合的潜力,从而可以成为开发新型 SSRI(选择性血清素再摄取抑制剂)药物的先导化合物。除了分子对接之外,还考虑了药物相似性参数,并通过 QSAR 建模对市售 SSRI 药物和标题分子的物理化学参数进行了比较。

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