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转移性口腔黏膜黑色素瘤中环状RNA的表达模式改变

Altered expression pattern of circular RNAs in metastatic oral mucosal melanoma.

作者信息

Ju Houyu, Zhang Liming, Mao Lu, Liu Shuli, Xia Weiya, Hu Jingzhou, Ruan Min, Ren Guoxin

机构信息

Department of Oral Maxillofacial-Head and Neck Oncology, Shanghai Ninth People's Hospital, School of Medicine, Shanghai Jiao Tong University China.

Shanghai Key Laboratory of Stomatology and Shanghai Research Institute of Stomatology Shanghai, China.

出版信息

Am J Cancer Res. 2018 Sep 1;8(9):1788-1800. eCollection 2018.

Abstract

Circular RNAs (circRNAs) are known to be associated with carcinogenesis, and can serve as potential biomarkers for cancer diagnosis and therapeutic implications. However, little is known about their expression patterns in oral mucosal melanoma (OMM), an extremely rare cancer that is distinct from cutaneous melanoma for its clinical course and prognosis. To investigate circRNAs expression profile in OMM, we performed a circRNAs microarray to analyze 6 primary OMM samples with lymph nodes dissemination, and constructed a genome-wide circRNA profile. Our results revealed that 90 circRNAs were significantly dysregulated in the metastatic OMM tissues when compared to the paired adjacent tissues. Among them, hsa_circ_0005320, hsa_circ_0067531, hsa_circ_0008042 were significantly upregulated in primary tumor and metastatic lymph nodes compared to paired adjacent normal tissues and non-metastatic lymph nodes, whereas the expression of hsa_circ_0000869 and hsa_circ_0000853 were downregulated relatively. Gene Ontology (GO) and pathway analyses of differentially expressed circRNAs indicated that these identified circRNAs might play important roles in protein modification, protein binding and cellular metabolism in metastatic OMM. Functions of several selected circRNA were also identified. In addition, by using bioinformatics predictions, we further demonstrated that hsa_circ_0005320, hsa_circ_0067531 and hsa_circ_0000869 could serve as competing endogenous RNA (ceRNA), which might regulate tumorigenesis and metastatic of OMM by binding to specific microRNAs. Our results not only suggested that circRNAs might play critical roles in metastasis of OMM, but also provided critical information of circRNAs in regulating OMM progression. The findings would help us to develop potential biomarkers for clinical diagnosis and design therapeutic strategies for OMM.

摘要

环状RNA(circRNAs)已知与癌症发生相关,并可作为癌症诊断和治疗意义的潜在生物标志物。然而,对于它们在口腔黏膜黑色素瘤(OMM)中的表达模式知之甚少,OMM是一种极其罕见的癌症,其临床病程和预后与皮肤黑色素瘤不同。为了研究circRNAs在OMM中的表达谱,我们进行了circRNAs微阵列分析,以分析6例伴有淋巴结转移的原发性OMM样本,并构建了全基因组circRNA图谱。我们的结果显示,与配对的相邻组织相比,90种circRNAs在转移性OMM组织中显著失调。其中,与配对的相邻正常组织和非转移性淋巴结相比,hsa_circ_0005320、hsa_circ_0067531、hsa_circ_0008042在原发性肿瘤和转移性淋巴结中显著上调,而hsa_circ_0000869和hsa_circ_0000853的表达相对下调。对差异表达的circRNAs进行基因本体论(GO)和通路分析表明,这些鉴定出的circRNAs可能在转移性OMM的蛋白质修饰、蛋白质结合和细胞代谢中发挥重要作用。还确定了几种选定circRNA的功能。此外,通过生物信息学预测,我们进一步证明hsa_circ_0005320、hsa_circ_0067531和hsa_circ_0000869可以作为竞争性内源RNA(ceRNA),它们可能通过与特定的微小RNA结合来调节OMM的肿瘤发生和转移。我们的结果不仅表明circRNAs可能在OMM转移中起关键作用,而且还提供了circRNAs在调节OMM进展中的关键信息。这些发现将有助于我们开发用于临床诊断的潜在生物标志物,并设计OMM的治疗策略。

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