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从稻田土壤中分离得到的一株新型细菌,命名为土壤盐单胞菌(Alsobacter soli sp. nov.)。修订了盐单胞菌属的描述,并建立了新的盐单胞菌科(Alsobacteraceae fam. nov.)。

Alsobacter soli sp. nov., a novel bacterium isolated from paddy soil, emended description of the genus Alsobacter and description of the family Alsobacteraceae fam. nov.

机构信息

1​Eco-Environmental Protection Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, PR China.

2​Shanghai Engineering Research Center of Low-carbon Agriculture (SERCLA), Shanghai, 201403, PR China.

出版信息

Int J Syst Evol Microbiol. 2018 Dec;68(12):3902-3907. doi: 10.1099/ijsem.0.003088. Epub 2018 Oct 26.

Abstract

Strain SH9, an aerobic bacterium isolated from a paddy soil sample collected in Shanghai, China, was characterized using a polyphasic approach. It grew optimally at pH 7.0, temperatures of 30-35 °C and in the presence of 1 % (w/v) NaCl. Comparative analysis of 16S rRNA gene sequences showed that strain SH9 fell within the genus Alsobacter, forming a clear cluster with the type strain of Alsobacter metallidurans, with which it exhibited a 16S rRNA gene sequence similarity value of 98.5 %. Cells of strain SH9 were Gram-stain-negative, motile, non-spore-forming, rod-shaped, positive for catalase and oxidase activity, and negative for atmospheric nitrogen fixation and nitrate reduction. The strain was a chemo-organotrophic bacterium, incapable of growth on C1 substrates. The chemotaxonomic properties of strain SH9 were consistent with those of the genus Alsobacter: the predominant ubiquinone was Q-10, and the major fatty acid was summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c). The major polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylcholine and phosphatidylmonomethylethanolamine. The DNA G+C content was 68.5 mol%. Strain SH9 exhibited a DNA-DNA relatedness level of 20±2 % with A. metallidurans NBRC 107718. Based on the data obtained, strain SH9 represents a novel species of the genus Alsobacter, for which the name Alsobactersoli sp. nov. is proposed. The type strain is SH9 (=JCM 32501=CCTCC AB 2017284). A new family, Alsobacteraceae fam. nov., is also proposed encompassing strain SH9 and Alsobacter metallidurans NBRC 107718.

摘要

从中国上海采集的稻田土壤样本中分离出一株好氧细菌 SH9,采用多相分类法对其进行了特征描述。它在 pH7.0、30-35°C 和 1%(w/v)NaCl 存在下生长最佳。16S rRNA 基因序列的比较分析表明,菌株 SH9属于 Alsobacter 属,与模式菌株 Alsobacter metallidurans 形成一个清晰的聚类,与后者的 16S rRNA 基因序列相似度为 98.5%。菌株 SH9 的细胞革兰氏阴性,运动,非孢子形成,杆状,过氧化氢酶和氧化酶活性阳性,固氮和硝酸盐还原阴性。该菌株是一种化能有机营养细菌,不能在 C1 底物上生长。菌株 SH9 的化学分类特征与 Alsobacter 属一致:主要的醌是 Q-10,主要的脂肪酸是 summed feature 8(C18:1ω7c 和/或 C18:1ω6c)。主要的极性脂是双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰甘油、磷脂酰胆碱和磷脂酰单甲基乙醇胺。DNA G+C 含量为 68.5mol%。菌株 SH9 与 A. metallidurans NBRC 107718 的 DNA-DNA 相关度为 20±2%。基于获得的数据,菌株 SH9 代表 Alsobacter 属的一个新种,建议将其命名为 Alsobactersoli sp. nov.。模式菌株为 SH9(=JCM 32501=CCTCC AB 2017284)。还提出了一个新的科,即 Alsobacteraceae fam. nov.,其中包含菌株 SH9 和 A. metallidurans NBRC 107718。

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