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从松林土壤中分离出的新属新种——粗糙松杆菌,以及将安卡微菌属和松杆菌属归入新科安卡微菌科,并对1968年斯塔利提出的安卡微菌属进行修订。

Pinisolibacter ravus gen. nov., sp. nov., isolated from pine forest soil and allocation of the genera Ancalomicrobium and Pinisolibacter to the family Ancalomicrobiaceae fam. nov., and emendation of the genus Ancalomicrobium Staley 1968.

作者信息

Dahal Ram Hari, Chaudhary Dhiraj Kumar, Kim Jaisoo

机构信息

Department of Life Science, College of Natural Sciences, Kyonggi University, Suwon, Gyeonggi-Do 16227, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2018 Jun;68(6):1955-1962. doi: 10.1099/ijsem.0.002772. Epub 2018 Apr 23.

Abstract

A novel bacterium, designated strain E9, was isolated from pine forest soil of Kyonggi University (Suwon, Republic of Korea). Cells were facultatively anaerobic, Gram-staining-negative, catalase-negative, oxidase-positive, non-motile, non-spore-forming, rod-shaped and straw coloured. Prosthecae were absent. Glucose was fermented. The strain grew in the pH range of 5.0-10.0 (optimum, 6.5-8.5) and at 45 °C (optimum, 28-32 °C). E9 was sensitive to NaCl at low concentration and tolerated only 0.2 % NaCl (w/v). A phylogenetic analysis based on 16S rRNA gene sequences revealed that E9 formed a lineage within the phylum Proteobacteria that was distinct from various members of the order Rhizobiales, including Ancalomicrobium adetum DSM 4722 (94.76 % sequence similarity), 'Nitratireductor lucknowense' IITR-21 (92.72 %), Prosthecomicrobium hirschii 16 (92.66 %) and Kaistia soli DSM 19436 (92.53 %). The predominant isoprenoid quinone was Q-10. The major polar lipids were diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and phosphatidyl-N-methylethanolamine. Major cellular fatty acids were summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c), summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), and C16 : 0. The DNA G+C content of the type strain was 68.4 mol%. Polyphasic characterization indicated that strain E9 represented a novel species in a novel genus within a novel family, for which the name Pinisolibacter ravus gen. nov., sp. nov. is proposed. The type strain of Pinisolibacter ravus is E9 (=KEMB 9005-534=KACC 19120=NBRC 112686). A formal allocation of the genus Ancalomicrobium to the family Ancalomicrobiaceae fam. nov. is also proposed.

摘要

从韩国京畿大学(水原市)的松林土壤中分离出一种新型细菌,命名为E9菌株。细胞为兼性厌氧,革兰氏染色阴性,过氧化氢酶阴性,氧化酶阳性,无运动性,不形成芽孢,杆状,呈稻草色。无柄杆菌。可发酵葡萄糖。该菌株在pH值5.0 - 10.0范围内生长(最适pH值6.5 - 8.5),在45 °C下生长(最适温度28 - 32 °C)。E9对低浓度NaCl敏感,仅耐受0.2 %(w/v)的NaCl。基于16S rRNA基因序列的系统发育分析表明,E9在变形菌门内形成了一个谱系,与根瘤菌目不同成员不同,包括阿氏无柄微菌DSM 4722(序列相似性94.76 %)、“勒克瑙硝酸盐还原菌”IITR - 21(92.72 %)、赫氏柄杆菌16(92.66 %)和土壤凯氏杆菌DSM 19436(92.53 %)。主要类异戊二烯醌为Q - 10。主要极性脂为双磷脂酰甘油、磷脂酰胆碱、磷脂酰乙醇胺、磷脂酰甘油和磷脂酰 - N - 甲基乙醇胺。主要细胞脂肪酸为总和特征8(C18 : 1ω7c和/或C18 : 1ω6c)、总和特征3(C16 : 1ω7c和/或C16 : 1ω6c)以及C16 : 0。模式菌株的DNA G + C含量为68.4 mol%。多相表征表明,E9菌株代表了一个新科内一个新属中的一个新物种,为此提出新属名锈色松栖菌属(Pinisolibacter),新种名锈色松栖菌(Pinisolibacter ravus)。锈色松栖菌的模式菌株为E9(=KEMB 9005 - 534 = KACC 19120 = NBRC 112686)。还提议将无柄微菌属正式归入新科无柄微菌科(Ancalomicrobiaceae)。

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