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完整大肠杆菌染色体的物理图谱:一种用于大型基因组文库快速分析和分类的新策略的应用

The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library.

作者信息

Kohara Y, Akiyama K, Isono K

出版信息

Cell. 1987 Jul 31;50(3):495-508. doi: 10.1016/0092-8674(87)90503-4.

DOI:10.1016/0092-8674(87)90503-4
PMID:3038334
Abstract

Thirty-four hundred lambda phage clones containing segments of the E. coli chromosome were isolated and used to construct a 4700 kb long integrated restriction map for eight six-base-recognizing enzymes by a rapid mass-analysis method. Our strategy was to measure the sizes of partial restriction enzyme digests by hybridization with a vector probe in a manner analogous to nucleotide sequencing. The data were sorted into groups by a computer program and the boundary clones were further correlated with each other using a mass hybridization method. These clones can be exploited for the isolation of any desired E. coli genes if their map positions are known. Also, the strategy is applicable to analyses of the genomes of other organisms.

摘要

分离出3400个含有大肠杆菌染色体片段的λ噬菌体克隆,并通过一种快速批量分析方法,用于构建8种识别六碱基的酶的4700kb长的整合限制酶图谱。我们的策略是通过与载体探针杂交来测量部分限制酶消化产物的大小,其方式类似于核苷酸测序。数据通过计算机程序进行分组,边界克隆通过批量杂交方法进一步相互关联。如果知道这些克隆的图谱位置,就可以利用它们来分离任何所需的大肠杆菌基因。此外,该策略适用于其他生物基因组的分析。

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The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library.完整大肠杆菌染色体的物理图谱:一种用于大型基因组文库快速分析和分类的新策略的应用
Cell. 1987 Jul 31;50(3):495-508. doi: 10.1016/0092-8674(87)90503-4.
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Map location of the Escherichia coli origin of replication.大肠杆菌复制起点的图谱定位。
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Physical map of the seven ribosomal RNA genes of Escherichia coli.大肠杆菌七个核糖体RNA基因的物理图谱。
Nucleic Acids Res. 1979;6(5):1817-30. doi: 10.1093/nar/6.5.1817.
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Randomly picked cosmid clones overlap the pyrB and oriC gap in the physical map of the E. coli chromosome.随机挑选的黏粒克隆覆盖了大肠杆菌染色体物理图谱中的pyrB和oriC缺口。
Nucleic Acids Res. 1988 Mar 25;16(6):2601-12. doi: 10.1093/nar/16.6.2601.
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A physical map of the Escherichia coli K12 genome.大肠杆菌K12基因组的物理图谱。
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Conservation and variation of nucleotide sequences within related bacterial genomes: Escherichia coli strains.相关细菌基因组内核苷酸序列的保守性与变异性:大肠杆菌菌株
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Restriction endonuclease mapping of the Escherichia coli K12 chromosome in the vicinity of the ilv genes.大肠杆菌K12染色体ilv基因附近区域的限制性内切酶图谱分析。
J Mol Biol. 1977 Nov 25;117(1):175-93. doi: 10.1016/0022-2836(77)90030-4.
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Proc Natl Acad Sci U S A. 1993 Mar 15;90(6):2522-6. doi: 10.1073/pnas.90.6.2522.

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