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利用分子鉴定技术分析长江漂流鱼卵的物种多样性

Species diversity of drifting fish eggs in the Yangtze River using molecular identification.

作者信息

Liu Mingdian, Wang Dengqiang, Gao Lei, Tian Huiwu, Liu Shaoping, Chen Daqing, Duan Xinbin

机构信息

Yangtze River Fisheries Research Institute of Chinese Academy of Fishery Science, Wuhan, Hubei, China.

出版信息

PeerJ. 2018 Oct 24;6:e5807. doi: 10.7717/peerj.5807. eCollection 2018.

Abstract

The dam constructions greatly changed the hydrologic conditions in the Yangtze River, and then significantly affected the spawning activities of indigenous river fish. Monitoring the species composition of drifting eggs during spawning season is important for protection issues. In this study, we have sampled drifting fish eggs in nine locations from 2014 to 2016. Eggs were identified using the mitochondrial cyt gene sequence. A total of 7,933 fish eggs were sequenced successfully and blasted into the NCBI database. Thirty-nine fish species were identified, and were assigned to four families and two orders. Approximately 64% of the species identified, and 67% of the eggs, were classified in the Family Cyprinidae. Abundance and Shannon-Wiener diversity index of species were higher in the main river than in tributaries of the river. However, tributaries may be important spawning grounds for some fish species. The Jaccard's similarity index and river-way distances among sampled stations were negatively correlated suggesting the environment shapes species composition in the sampled spawning grounds. These results showed that mitochondrial DNA sequence is a powerful and effective tool for fish egg identification in Yangtze River and these data are useful for conservation efforts.

摘要

大坝建设极大地改变了长江的水文条件,进而显著影响了长江土著鱼类的产卵活动。在产卵季节监测漂流鱼卵的物种组成对于保护工作至关重要。在本研究中,我们于2014年至2016年在九个地点采集了漂流鱼卵样本。利用线粒体细胞色素基因序列对鱼卵进行鉴定。总共成功测序了7933枚鱼卵,并与NCBI数据库进行比对。鉴定出39种鱼类,分属于两个目、四个科。所鉴定出的物种中约64%以及鱼卵中约67%属于鲤科。主河道中物种的丰度和香农-维纳多样性指数高于支流。然而,支流可能是一些鱼类的重要产卵场。采样站点间的杰卡德相似性指数与河道距离呈负相关,这表明环境塑造了采样产卵场中的物种组成。这些结果表明,线粒体DNA序列是长江鱼卵鉴定的有力且有效的工具,这些数据对保护工作很有用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b37f/6203937/0f0b5476fda8/peerj-06-5807-g001.jpg

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