Department of Applied Physics, Graduate School of Engineering, Tohoku University, Sendai, Japan.
Department of Physics, University of Tokyo, Hongo Bunkyo-ku, Tokyo, Japan.
Biophys J. 2018 Nov 20;115(10):1981-1992. doi: 10.1016/j.bpj.2018.09.032. Epub 2018 Oct 16.
Dimeric motor proteins, kinesin-1, cytoplasmic dynein-1, and myosin-V, move stepwise along microtubules and actin filaments with a regular step size. The motors take backward as well as forward steps. The step ratio r and dwell time τ, which are the ratio of the number of backward steps to the number of forward steps and the time between consecutive steps, respectively, were observed to change with the load. To understand the movement of motor proteins, we constructed a unified and simple mathematical model to explain the load dependencies of r and of τ measured for the above three types of motors quantitatively. Our model consists of three states, and the forward and backward steps are represented by the cycles of transitions visiting different pairs of states among the three, implying that a backward step is not the reversal of a forward step. Each of r and τ is given by a simple expression containing two exponential functions. The experimental data for r and τ for dynein available in the literature are not sufficient for a quantitative analysis, which is in contrast to those for kinesin and myosin-V. We reanalyze the data to obtain r and τ of native dynein to make up the insufficient data to fit them to the model. Our model successfully describes the behavior of r and τ for all of the motors in a wide range of loads from large assisting loads to superstall loads.
二聚体马达蛋白,如驱动蛋白-1、细胞质动力蛋白-1 和肌球蛋白-V,沿着微管和肌动蛋白丝以规则的步长进行逐步运动。这些马达既能向前运动,也能向后运动。步长比 r 和停留时间 τ,分别是向后步长与向前步长的比值,以及连续两步之间的时间间隔,观察到它们随负载而变化。为了理解马达蛋白的运动,我们构建了一个统一而简单的数学模型,以定量解释上述三种类型的马达的 r 和 τ 随负载的依赖性。我们的模型由三个状态组成,向前和向后的步骤分别由访问三个状态之间不同对的状态的循环来表示,这意味着向后的步骤不是向前步骤的逆转。r 和 τ 中的每一个都由一个简单的表达式给出,其中包含两个指数函数。文献中关于动力蛋白的 r 和 τ 的实验数据不足以进行定量分析,这与驱动蛋白和肌球蛋白-V 形成对比。我们重新分析了数据,以获得天然动力蛋白的 r 和 τ,以弥补数据不足,将其拟合到模型中。我们的模型成功地描述了所有马达在从大辅助负载到超停负载的广泛负载范围内 r 和 τ 的行为。