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丝状蓝细菌中噪声引发的发育模式形成

Noise⁻Seeded Developmental Pattern Formation in Filamentous Cyanobacteria.

作者信息

Arbel-Goren Rinat, Di Patti Francesca, Fanelli Duccio, Stavans Joel

机构信息

Department of Physics of Complex Systems, Weizmann Institute of Science, Rehovot 7610001, Israel.

Consorzio Interuniversitario Nazionale per la Scienza e Tecnologia dei Materiali, Dip. di Chimica, Università degli Studi di Firenze, Via della Lastruccia 3-13, 50019 Sesto Fiorentino, Firenze, Italy.

出版信息

Life (Basel). 2018 Nov 9;8(4):58. doi: 10.3390/life8040058.

Abstract

Under nitrogen-poor conditions, multicellular cyanobacteria such as sp. PCC 7120 undergo a process of differentiation, forming nearly regular, developmental patterns of individual nitrogen-fixing cells, called heterocysts, interspersed between intervals of vegetative cells that carry out photosynthesis. Developmental pattern formation is mediated by morphogen species that can act as activators and inhibitors, some of which can diffuse along filaments. We survey the limitations of the classical, deterministic Turing mechanism that has been often invoked to explain pattern formation in these systems, and then, focusing on a simpler system governed by birth-death processes, we illustrate pedagogically a recently proposed paradigm that provides a much more robust description of pattern formation: stochastic Turing patterns. We emphasize the essential role that cell-to-cell differences in molecular numbers-caused by inevitable fluctuations in gene expression-play, the so called demographic noise, in seeding the formation of stochastic Turing patterns over a much larger region of parameter space, compared to their deterministic counterparts.

摘要

在贫氮条件下,多细胞蓝细菌,如集胞藻PCC 7120会经历一个分化过程,形成几乎规则的、发育性的单个固氮细胞模式,即异形胞,散布在进行光合作用的营养细胞间隔之间。发育模式的形成由形态发生素介导,这些形态发生素可作为激活剂和抑制剂,其中一些能沿丝状体扩散。我们考察了常被用来解释这些系统中模式形成的经典确定性图灵机制的局限性,然后,聚焦于一个由生死过程控制的更简单系统,我们从教学角度阐释了最近提出的一个范式:随机图灵模式。我们强调分子数量的细胞间差异——由基因表达中不可避免的波动引起,即所谓的种群统计噪声——在与确定性对应物相比时,在更大的参数空间区域中引发随机图灵模式形成所起的关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/347a/6316479/e9c4a02a44dc/life-08-00058-g001.jpg

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