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人呼吸道合胞病毒 M2-1 蛋白与磷蛋白 P 的相互作用域结合的结构确定了复合物的取向。

The Structure of the Human Respiratory Syncytial Virus M2-1 Protein Bound to the Interaction Domain of the Phosphoprotein P Defines the Orientation of the Complex.

机构信息

School of Molecular and Cellular Biology, University of Leeds, Leeds, United Kingdom.

Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, United Kingdom.

出版信息

mBio. 2018 Nov 13;9(6):e01554-18. doi: 10.1128/mBio.01554-18.

Abstract

Human respiratory syncytial virus (HRSV) is a negative-stranded RNA virus that causes a globally prevalent respiratory infection, which can cause life-threatening illness, particularly in the young, elderly, and immunocompromised. HRSV multiplication depends on replication and transcription of the HRSV genes by the virus-encoded RNA-dependent RNA polymerase (RdRp). For replication, this complex comprises the phosphoprotein (P) and the large protein (L), whereas for transcription, the M2-1 protein is also required. M2-1 is recruited to the RdRp by interaction with P and also interacts with RNA at overlapping binding sites on the M2-1 surface, such that binding of these partners is mutually exclusive. The molecular basis for the transcriptional requirement of M2-1 is unclear, as is the consequence of competition between P and RNA for M2-1 binding, which is likely a critical step in the transcription mechanism. Here, we report the crystal structure at 2.4 Å of M2-1 bound to the P interaction domain, which comprises P residues 90 to 110. The P90-110 peptide is alpha helical, and its position on the surface of M2-1 defines the orientation of the three transcriptase components within the complex. The M2-1/P interface includes ionic, hydrophobic, and hydrogen bond interactions, and the critical contribution of these contacts to complex formation was assessed using a minigenome assay. The affinity of M2-1 for RNA and P ligands was quantified using fluorescence anisotropy, which showed high-affinity RNAs could outcompete P. This has important implications for the mechanism of transcription, particularly the events surrounding transcription termination and synthesis of poly(A) sequences. Human respiratory syncytial virus (HRSV) is a leading cause of respiratory illness, particularly in the young, elderly, and immunocompromised, and has also been linked to the development of asthma. HRSV replication depends on P and L, whereas transcription also requires M2-1. M2-1 interacts with P and RNA at overlapping binding sites; while these interactions are necessary for transcriptional activity, the mechanism of M2-1 action is unclear. To better understand HRSV transcription, we solved the crystal structure of M2-1 in complex with the minimal P interaction domain, revealing molecular details of the M2-1/P interface and defining the orientation of M2-1 within the tripartite complex. The M2-1/P interaction is relatively weak, suggesting high-affinity RNAs may displace M2-1 from the complex, providing the basis for a new model describing the role of M2-1 in transcription. Recently, the small molecules quercetin and cyclopamine have been used to validate M2-1 as a drug target.

摘要

人呼吸道合胞病毒(HRSV)是一种负链 RNA 病毒,可引起全球流行的呼吸道感染,可导致危及生命的疾病,尤其是在幼儿、老年人和免疫功能低下者中。HRSV 的繁殖依赖于病毒编码的 RNA 依赖性 RNA 聚合酶(RdRp)对 HRSV 基因的复制和转录。对于复制,该复合物包含磷蛋白(P)和大蛋白(L),而对于转录,还需要 M2-1 蛋白。M2-1 通过与 P 的相互作用被招募到 RdRp,并且还与 M2-1 表面上的 RNA 重叠结合位点相互作用,使得这些伴侣的结合是相互排斥的。M2-1 转录需求的分子基础尚不清楚,P 和 RNA 竞争 M2-1 结合的后果也不清楚,这可能是转录机制中的一个关键步骤。在这里,我们报告了与 P 相互作用结构域(包含 P 残基 90 到 110)结合的 M2-1 的晶体结构,该结构域为 2.4 Å。P90-110 肽是α螺旋,其在 M2-1 表面上的位置定义了复合物内三个转录酶成分的方向。M2-1/P 界面包括离子、疏水和氢键相互作用,使用 minigenome 测定评估了这些接触对复合物形成的重要贡献。使用荧光各向异性定量了 M2-1 与 RNA 和 P 配体的亲和力,结果表明高亲和力的 RNA 可以与 P 竞争。这对转录机制,特别是转录终止和 poly(A)序列合成事件具有重要意义。人呼吸道合胞病毒(HRSV)是一种主要的呼吸道疾病病原体,尤其是在幼儿、老年人和免疫功能低下者中,也与哮喘的发展有关。HRSV 的复制依赖于 P 和 L,而转录还需要 M2-1。M2-1 与 P 和 RNA 在重叠的结合位点相互作用;虽然这些相互作用对于转录活性是必要的,但 M2-1 作用的机制尚不清楚。为了更好地理解 HRSV 转录,我们解析了 M2-1 与最小 P 相互作用结构域的复合物的晶体结构,揭示了 M2-1/P 界面的分子细节,并确定了 M2-1 在三组分复合物中的方向。M2-1/P 相互作用相对较弱,这表明高亲和力的 RNA 可能从复合物中置换 M2-1,为描述 M2-1 在转录中的作用提供了新的模型。最近,小分子槲皮素和环巴胺已被用于验证 M2-1 作为药物靶标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c3ff/6234862/2d381f22f737/mbo0051841620001.jpg

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