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通过环介导等温扩增技术灵敏快速地检测寨卡病毒

Sensitive and rapid detection of Zika virus by loop-mediated isothermal amplification.

作者信息

Zhao Jiangtao, Feng Ruo

机构信息

Department of Histology and Embryology, School of Basic Medical Sciences, Zhengzhou University, Zhengzhou, People's Republic of China.

出版信息

Virus Genes. 2019 Feb;55(1):43-50. doi: 10.1007/s11262-018-1612-x. Epub 2018 Nov 13.

DOI:10.1007/s11262-018-1612-x
PMID:30426316
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7089109/
Abstract

Zika virus (ZIKV) is a mosquito-borne flavivirus, which is a pathogen affecting humans in Africa, Asia, and America. It is necessary to detect ZIKV with a rapid and sensitive molecular method to guide timely treatment. In this study, a loop-mediated isothermal amplification (LAMP) assay was described, which is an attractive option as a fast, sensitive, and specific method for ZIKV detection using the NS5 protein coding region and the envelope protein (EP) coding region as target sequences. Two different techniques, a calcein/Mn complex chromogenic method and real-time turbidity monitoring, were employed. The specificity and sensitivity of the LAMP assay were determined. The assay's detection limit was 0.5 × 10 pmol/µl DNA for NS5 protein coding region and 1.12 × 10 pmol/µl DNA for E coding region, respectively, which is a 100-fold increase in sensitivity compared with real-time reverse transcription-polymerase chain reaction (RT-PCR) and conventional PCR. All 12 non-ZIKA respiratory pathogens tested were negative for LAMP detection, indicating the high specificity of the primers for ZIKV. In conclusion, a visual detection LAMP assay was developed, which could be a useful tool for primary quarantine purposes and clinical screening, especially in situations where resources are poor and in point-of-care tests.

摘要

寨卡病毒(ZIKV)是一种由蚊子传播的黄病毒,是一种在非洲、亚洲和美洲影响人类的病原体。有必要采用快速灵敏的分子方法检测寨卡病毒,以指导及时治疗。在本研究中,描述了一种环介导等温扩增(LAMP)检测方法,该方法作为一种快速、灵敏且特异的寨卡病毒检测方法颇具吸引力,它使用NS5蛋白编码区和包膜蛋白(EP)编码区作为靶序列。采用了两种不同技术,即钙黄绿素/锰复合物显色法和实时浊度监测法。测定了LAMP检测方法的特异性和灵敏度。该检测方法对NS5蛋白编码区的检测限为0.5×10 pmol/µl DNA,对E编码区的检测限为1.12×10 pmol/µl DNA,与实时逆转录聚合酶链反应(RT-PCR)和传统PCR相比,灵敏度提高了100倍。所检测的12种非寨卡病毒呼吸道病原体的LAMP检测均为阴性,表明寨卡病毒引物具有高度特异性。总之,开发了一种可视化检测LAMP检测方法,它可能是用于初步检疫目的和临床筛查的有用工具,特别是在资源匮乏的情况下和即时检测中。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a880/7089109/b3c4d69f2e9a/11262_2018_1612_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a880/7089109/3bdb284b4090/11262_2018_1612_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a880/7089109/604f82fc7bf1/11262_2018_1612_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a880/7089109/3c80363e07bc/11262_2018_1612_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a880/7089109/b3c4d69f2e9a/11262_2018_1612_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a880/7089109/3bdb284b4090/11262_2018_1612_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a880/7089109/604f82fc7bf1/11262_2018_1612_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a880/7089109/3c80363e07bc/11262_2018_1612_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a880/7089109/b3c4d69f2e9a/11262_2018_1612_Fig4_HTML.jpg

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