Shi Yun-Lei, Sun Ye, Jiang Zhu-Ming, Ruan Zhi-Yong, Su Jing, Yu Li-Yan, Zhang Yu-Qin
1Chinese Academy of Medical Sciences and Peking Union Medical College, Institute of Medicinal Biotechnology, Beijing 100050, PR China.
2Institute of Agricultural Resources and Regional Planning, CAAS, Beijing 100081, PR China.
Int J Syst Evol Microbiol. 2019 Jan;69(1):129-133. doi: 10.1099/ijsem.0.003112. Epub 2018 Nov 15.
A Gram-stain-negative, motile, rod-shaped bacterium, designated CPCC 100842, was isolated from a freshwater reservoir in south-west China. The 16S rRNA gene sequence comparison of strain CPCC 100842 with the available sequences in the GenBank database showed that the isolate was closely related to members of the family Comamonadaceae, with the highest similarities to Simplicispira metamorpha DSM 1837 (98.05 %), Simplicispira limi KCTC 12608 (97.86 %), Simplicispira psychrophila LMG 5408 (97.04 %) and Simplicispira piscis JCM 19291 (97.0 %). In the phylogenetic tree based on 16S rRNA gene sequences, strain CPCC 100842 formed a distinct phylogenetic subclade within the genus Simplicispira. The major cellular fatty acids were as C16 : 0 and summed feature 3 (C16 : 1 ω7c/C16 : 1ω6c). Q-8 was detected as the only respiratory quinone. Phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, aminophospholipid and glycolipid were found in the polar lipid extraction. The genomic DNA G+C content was 67.4 mol%. The average nucleotide identity value was 80.4 % by comparing the draft genome sequences of strain CPCC 100842 and S. metamorpha DSM 1837. The DNA-DNA hybridization result between strain CPCC 100842 and S. metamorpha DSM 1837 showed 37±3 % genomic relatedness. On the basis of the genotypic analysis and phenotypic characteristics, we propose that strain CPCC 100842 represents a novel species of the genus Simplicispira in the family Comamonadaceae with the name Simplicispira lacusdiani sp. nov. Strain CPCC 100842 (=KCTC 52093=DSM 102231) is the type strain of the species.
从中国西南部的一个淡水水库中分离出一株革兰氏阴性、具运动性、杆状的细菌,命名为CPCC 100842。对菌株CPCC 100842的16S rRNA基因序列与GenBank数据库中现有序列进行比较,结果表明该分离株与丛毛单胞菌科的成员密切相关,与变形简单螺旋菌DSM 1837(98.05%)、湖生简单螺旋菌KCTC 12608(97.86%)、嗜冷简单螺旋菌LMG 5408(97.04%)和鱼简单螺旋菌JCM 19291(97.0%)的相似性最高。在基于16S rRNA基因序列构建的系统发育树中,菌株CPCC 100842在简单螺旋菌属内形成了一个独特的系统发育亚分支。主要细胞脂肪酸为C16 : 0和特征性总和3(C16 : 1 ω7c/C16 : 1ω6c)。检测到Q-8为唯一的呼吸醌。在极性脂质提取物中发现了磷脂酰乙醇胺、磷脂酰甘油、二磷脂酰甘油、氨基磷脂和糖脂。基因组DNA的G+C含量为67.4mol%。通过比较菌株CPCC 100842和变形简单螺旋菌DSM 1837的草图基因组序列,平均核苷酸同一性值为80.4%。菌株CPCC 100842与变形简单螺旋菌DSM 1837之间的DNA-DNA杂交结果显示基因组相关性为37±3%。基于基因型分析和表型特征,我们提议菌株CPCC 100842代表丛毛单胞菌科简单螺旋菌属的一个新物种,命名为湖生简单螺旋菌(Simplicispira lacusdiani sp. nov.)。菌株CPCC 100842(=KCTC 52093=DSM 102231)是该物种的模式菌株。