China Tobacco Yunnan Industrial Co. Ltd., Kunming, 650231, People's Republic of China.
School of Life Sciences, Yunnan Minzu University, Kunming, 650031, People's Republic of China.
Antonie Van Leeuwenhoek. 2024 Jan 3;117(1):13. doi: 10.1007/s10482-023-01899-w.
A Gram-stain-negative, motile (by single polar flagellum) and rod-shaped bacterium, designated W1-6, was isolated from a sediment of drainage ditch in winery in Guiyang, south-western China. Strain W1-6 showed the highest 16S rRNA gene sequence similarities with the type strain of Acidovorax wautersii (98.1%) and Simplicispira lacusdiani (97.9%). Phylogenetic analysis based on 16S rRNA gene sequences showed that strain W1-6 was placed adjacent to the members of the genus Simplicispira and formed a separat subclade. Cells showed oxidase and catalase negative reactions. The only respiratory quinone detected was ubiquinone-8 (Q-8). Summed feature 3 (C ω7c and/or C ω6c), C and summed feature 8 (C ω7c and/or C ω6c) were predominant cellular fatty acids (> 10%) of strain W1-6. Diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and five unidentified phospholipids were found in the polar lipid extraction. The genomic DNA G + C content was 65.6%. Strain W1-6 shared the highest digital DNA-DNA hybridization [dDDH, (27.6%)] and average nucleotide identity [ANI (84.3%)] values with the type strain of S. lacusdiani. The dDDH and ANI values were below the cutoff level (dDDH 70%; ANI 95-96%) for species delineation. The polyphasic characteristics indicated that the strain W1-6 represents a novel species of the genus Simplicispira, for which the name Simplicispira sedimenti sp. nov. is proposed. The type strain is W1-6 (= CGMCC 1.16274 = NBRC 115624).
一株革兰氏阴性、运动(通过单一极生鞭毛)的杆状细菌,被命名为 W1-6,从中国西南部贵阳酒厂排水沟的沉积物中分离得到。菌株 W1-6 与 Acidovorax wautersii(98.1%)和 Simplicispira lacusdiani(97.9%)的模式菌株具有最高的 16S rRNA 基因序列相似性。基于 16S rRNA 基因序列的系统发育分析表明,菌株 W1-6 与 Simplicispira 属的成员相邻,并形成一个独立的分支。细胞表现出氧化酶和过氧化氢酶阴性反应。唯一检测到的呼吸醌是泛醌-8(Q-8)。细胞脂肪酸主要由 summed feature 3(C ω7c 和/或 C ω6c)、C 脂肪酸和 summed feature 8(C ω7c 和/或 C ω6c)组成(>10%)。菌株 W1-6 的极性脂提取中发现了二磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺和五种未鉴定的磷脂。基因组 DNA G+C 含量为 65.6%。菌株 W1-6 与 S. lacusdiani 模式菌株的数字 DNA-DNA 杂交(dDDH,(27.6%))和平均核苷酸同一性(ANI,84.3%)最高。dDDH 和 ANI 值低于种间区分的临界值(dDDH 70%;ANI 95-96%)。多相特征表明,菌株 W1-6 代表 Simplicispira 属的一个新种,建议将其命名为 Simplicispira sedimenti sp. nov.。模式菌株为 W1-6(=CGMCC 1.16274=NBRC 115624)。