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汉氏单胞菌属,一种新型的从污泥中分离得到的反硝化细菌。

Simplicispira hankyongi sp. nov., a novel denitrifying bacterium isolated from sludge.

机构信息

Department of Biotechnology, Hankyong National University, 327 Chungang-no, Anseong-si, Kyonggi-do, 17579, Republic of Korea.

AceEMzyme Co., Ltd., Academic Industry Cooperation, 327 Chungang-no, Anseong-si, Kyonggi-do, 17579, Republic of Korea.

出版信息

Antonie Van Leeuwenhoek. 2020 Mar;113(3):331-338. doi: 10.1007/s10482-019-01341-0. Epub 2019 Oct 17.

Abstract

A Gram-stain-negative, facultatively anaerobic, motile, light-yellow, and rod-shaped bacterium, designated as NY-02, was isolated from the sludge of a wastewater treatment plant in Hanam City, Republic of Korea. The comparison of 16S rRNA gene sequences revealed that the strain formed a distinct lineage within the genus Simplicispira and was most closely related to S. suum SC1-8 (99.0%), S. limi EMB325 (98.3%), S. psychrophila LMG 5408 (98.2%), and S. piscis RSG39 (97.4%). Both average nucleotide identity (ANI) and DNA-DNA hybridization (DDH) values between strain NY-02, and its closes type strains [S. suum SC1-8, S. limi EMB325, S. psychrophila LMG 5408, and S. piscis RSG39] were lower than the cut-off (≥ 95-96% for ANI and ≥ 70% for DDH) to define a bacterial species. The genome comprises of 3,709,074 bp with a G + C content of 64.2 mol%. Ubiquinone 8 (Q-8) was the predominant quinone. The major fatty acids were C and summed feature 3 (Cω7c and/or Cω6c), and the major polar lipids were phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylethanolamine. The results of the physiological, biochemical, and taxonomic analyses in addition to low ANI and DNA-DNA relatedness values (82.2% and < 34.0%, respectively) indicate that the strain NY-02 represents a novel species of the genus Simplicispira. The name proposed for strain NY-02 (= KACC 19731 = LMG 31165) is Simplicispira hankyongi sp. nov.

摘要

从韩国华城市一家废水处理厂的污泥中分离到一株革兰氏阴性、兼性厌氧、能运动、浅黄色、杆状的细菌,命名为 NY-02。16S rRNA 基因序列比较表明,该菌株在 Simplicispira 属内形成一个独特的谱系,与 S. suum SC1-8(99.0%)、S. limi EMB325(98.3%)、S. psychrophila LMG 5408(98.2%)和 S. piscis RSG39(97.4%)最为密切相关。与 NY-02 及其近缘模式菌株(S. suum SC1-8、S. limi EMB325、S. psychrophila LMG 5408 和 S. piscis RSG39)之间的平均核苷酸同一性(ANI)和 DNA-DNA 杂交(DDH)值均低于定义细菌种的界限值(ANI≥95-96%,DDH≥70%)。基因组由 3,709,074bp 组成,G+C 含量为 64.2mol%。泛醌 8(Q-8)是主要的醌。主要脂肪酸为 C 和总和特征 3(Cω7c 和/或 Cω6c),主要极性脂为磷脂酰甘油、双磷脂酰甘油和磷脂酰乙醇胺。生理、生化和分类分析的结果,加上低的 ANI 和 DNA-DNA 相关性值(分别为 82.2%和<34.0%)表明,菌株 NY-02 代表 Simplicispira 属的一个新种。建议菌株 NY-02(=KACC 19731=LMG 31165)的名称为 Hankyongiella hankyongensis sp. nov.

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