Knomics-Biota——一种用于人类肠道微生物群数据探索性分析的系统。
Knomics-Biota - a system for exploratory analysis of human gut microbiota data.
作者信息
Efimova Daria, Tyakht Alexander, Popenko Anna, Vasilyev Anatoly, Altukhov Ilya, Dovidchenko Nikita, Odintsova Vera, Klimenko Natalya, Loshkarev Robert, Pashkova Maria, Elizarova Anna, Voroshilova Viktoriya, Slavskii Sergei, Pekov Yury, Filippova Ekaterina, Shashkova Tatiana, Levin Evgenii, Alexeev Dmitry
机构信息
Research and Development Department, Knomics LLC, Skolkovo Innovation Center, Moscow, Russian Federation.
2Computer Technologies Laboratory, ITMO University, Saint Petersburg, Russian Federation.
出版信息
BioData Min. 2018 Nov 6;11:25. doi: 10.1186/s13040-018-0187-3. eCollection 2018.
BACKGROUND
Metagenomic surveys of human microbiota are becoming increasingly widespread in academic research as well as in food and pharmaceutical industries and clinical context. Intuitive tools for investigating experimental data are of high interest to researchers.
RESULTS
Knomics-Biota is a web-based resource for exploratory analysis of human gut metagenomes. Users can generate and share analytical reports corresponding to common experimental schemes (like case-control study or paired comparison). Interactive visualizations and statistical analysis are provided in association with the external factors and in the context of thousands of publicly available datasets arranged into thematic collections. The web-service is available at https://biota.knomics.ru.
CONCLUSIONS
Knomics-Biota web service is a comprehensive tool for interactive metagenomic data analysis.
背景
人类微生物群的宏基因组学调查在学术研究、食品和制药行业以及临床环境中越来越普遍。研究人员对用于研究实验数据的直观工具非常感兴趣。
结果
Knomics-Biota是一个基于网络的资源，用于对人类肠道宏基因组进行探索性分析。用户可以生成并分享与常见实验方案（如病例对照研究或配对比较）相对应的分析报告。结合外部因素并在数千个按主题分类的公开可用数据集的背景下提供交互式可视化和统计分析。该网络服务可在https://biota.knomics.ru获取。
结论
Knomics-Biota网络服务是用于交互式宏基因组数据分析的综合工具。
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