Rees Christiaan A, Nordick Katherine V, Franchina Flavio A, Lewis Alexa E, Hirsch Elizabeth B, Hill Jane E
Geisel School of Medicine, Dartmouth College, Hanover, NH, United States.
Dartmouth College, Hanover, NH, United States.
Metabolomics. 2017 Feb;13(2). doi: 10.1007/s11306-016-1161-z. Epub 2017 Jan 12.
Microorganisms catabolize carbon-containing compounds in their environment during growth, releasing a subset of metabolic byproducts as volatile compounds. However, the relationship between growth media and the production of volatile compounds has been largely unexplored to-date.
To assess the core and media-specific components of the volatile metabolome via growth in four culture media.
Headspace volatiles produced by cultures of after growth to stationary phase in four rich media (brain heart infusion broth, lysogeny broth, Mueller-Hinton broth, and tryptic soy broth) were analyzed using comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry (GC×GC-TOFMS). Differences in the composition of headspace volatiles as a function of growth media was assessed using hierarchical clustering analysis (HCA) and principal component analysis (PCA).
A total of 365 volatile compounds were associated with the growth of across all media, of which 36 (10 %) were common to all growth media, and 148 (41 %) were specific to a single medium. In addition, utilizing all -associated volatile compounds, strains clustered as a function of growth media, demonstrating the importance of media in determining the metabolic profile of this organism.
produces a core suite of volatile compounds across all growth media studied, although the volatile metabolic signature of this organism is fundamentally media-dependent.
微生物在生长过程中分解代谢其环境中的含碳化合物,释放出一部分代谢副产物作为挥发性化合物。然而,迄今为止,生长培养基与挥发性化合物产生之间的关系在很大程度上尚未得到探索。
通过在四种培养基中生长来评估挥发性代谢组的核心成分和培养基特异性成分。
使用全二维气相色谱-飞行时间质谱(GC×GC-TOFMS)分析在四种丰富培养基(脑心浸液肉汤、溶原肉汤、穆勒-欣顿肉汤和胰蛋白胨大豆肉汤)中生长至稳定期后的培养物产生的顶空挥发物。使用层次聚类分析(HCA)和主成分分析(PCA)评估顶空挥发物组成随生长培养基的差异。
在所有培养基中,共有365种挥发性化合物与该菌的生长相关,其中36种(10%)在所有生长培养基中都有,148种(41%)是单一培养基特有的。此外,利用所有与该菌相关的挥发性化合物,菌株根据生长培养基聚类,表明培养基在确定该生物体代谢谱方面的重要性。
在所研究的所有生长培养基中,该菌都会产生一组核心挥发性化合物,尽管该生物体的挥发性代谢特征基本上依赖于培养基。